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Query: gi|29345419|ref|NP_808922.1|(removed signal:1-26) phosphate-binding periplasmic protein precursor, putative ABC transporter BT_0009 [Bacteroides thetaiotaomicron VPI-5482], from B.thetaiotaomicron

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst AATLFTSGKPVEELSENAAVGRKSVITAAGATLPLPFYSEAFKMYWEKNDIPVTYAGIGTERGFRSLKNQQIDFAGVDVPPTKAELDSLPVKSILVPTCMGAVTIAYNLEGVDNLRLTGELIADIYMGKILKWNDARIAAVNAGKQLPDKEIYPVFRLDGSGTTYIFSDYLTKVSTDWKAKIGTGKALTFPRGVAATGNTGVAGLVGKVPGAIGYVASEYAASFNTQSAWLKNAAGNFVQPTSESVTAVASVGDATGMITDSEVADAYPISCFTWVVLYKEQNYAGRSRSEAEETVKLLEWLISPEAQTITTQVQCSPLPEKAVEYAKNMLKEVTYDGKALRKLast
1 -102.000d1pc3a_ c.94.1.1 (A:) Phosphate-binding protein {Mycobacterium tuberculosis [TaxId: 1773]}  ali model 3D-neighbors follow..  23  2...............ATTPASSPVTLAETGSTLLYPLFNLWGPAFHEYPNVTITAQGTGSGAGIAQAAAGTVNIGASDAYLSEGDMAA-HKGLMNIALAISAQQVNYNLPGVEHLKLNGKVLAAMYQGTIKTWDDPQIAALNPGVNLPGTAVVPLHRSDGSGDTFLFTQYLSKQDPEGWGKSPGFGTTVDPGALGENGNGGMVTGCAETPGCVAYIGISFLDQAGLGEAQLGNSSGNFLLPDAQSIQAAAAGFNQAISMIDGPAPDGYPIINYEYAIVNNRQK----DAATAQTLQAFLHWAITDGNKSFLDQVHFQPLPPAVVKLSDALIATISS....... 333
2 -101.000d1ixha_ c.94.1.1 (A:) Phosphate-binding protein {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  33  1......................EASLTGAGATFPAPVYAKWADTYQKETGNKVNYQGIGSSGGVKQIIANTVDFGASDAPLSDEKLAQE--GLFQFPTVIGGVVLAVNIPGLGELVLDGKTLGDIYLGKIKKWDDEAIAKLNPGLKLPSQNIAVVRRADGSGTSFVFTSYLAKVNEEWKNNVGTGSTVKWPIGLGGKGNDGIAAFVQRLPGAIGYVEYAYAKQNNLAYTKLISADGKPVSPTEENFANAAKGADWAQDLTNQKGEDAWPITSTTFILIHKDQK----KPEQGTEVLKFFDWAYK-TGAKQANDLDYASLPDSVVEQVRAAWKTNISSGKPLY. 321
3 -89.600d4f19a1 c.94.1.1 (A:1001-1370) Phosphate-binding protein {Pseudomonas fluorescens [TaxId: 294]}  ali model 3D-neighbors follow..  21  1........................DINGGGATLPQALYQTSGVLT----AGFAQYIGVGSGNGKAAFLNKNVHWAGSDSKLSATELSTYASKLIQVPSVGTSVAIPFNKSGSAAVDLSVQELCGVFSGRINTWDGISG-------SGRTGPIVVVYRSESSGTTELFTRFLNAKCNAETGNFAVTTTFGTSGAVAATGSQGVMTALAAGDGRITYMSPDFAAPTGLDDATKVARVGKNVATNTQGVSPAAANVSAAIGGVQPYPTSGYPILGFTNLIFSQCYA----DATQTTQVRDFFTKHYSNNNDAAITANAFVPLPTAWKATVRASFLTASNAGRPL.. 370
4 -61.200d4n13a_ c.94.1.0 (A:) automated matches {Borrelia burgdorferi [TaxId: 224326]}  ali model 3D-neighbors follow..  20  1......................EKIVSIGGSTTVSPILDEMILRYDKNNNTKVTYDAQGSSVGINGLFNKIYKIAISSRDLTKEEIEQG---AKETVFAYDALIFITS-PEIKITNITEENLAKILNGEIQNWKQVG----------PDAKINFINRDSSSGSYSSIKDLLLNKIFK-----THEEAQFRQDGIVVKSNGEVIEKTSLTPHSIGYIGLGYAKNSIEKGLNILSVNS--TYPTKETIN-----------------SNKYTIKRNLIIVTNNKYED--------KSVTQFIDFMTSSTGQDIVEEQGFLGIKT...................... 255
5 -59.000d4exla_ c.94.1.0 (A:) automated matches {Streptococcus pneumoniae [TaxId: 637987]}  ali model 3D-neighbors follow..  21  1......................GESITAVGSTALQPLVEVAADEFGTHVGKTVNVQGGGSGTGLSQVQSGAVDIGNSDVFAEEKDGID-ASALVDHKVAVAGLALIVN-KEVDVDNLTTEQLRQIFIGEVTNWKEVG----------KDLPISVINRAAGSGSRATFDTVIMEGQSA-------------MQSQEQDSNGAVKSIVSKSPGAISYLSLTYIDDS------VKSMKLNGYDLSPENIS-----------------SNNWPLWSYEHMYTLGQPN---------ELAAEFLNFVLSDETQEIVKGLKYIPIKEMKVEKDAAGTVTVLEG...... 261
6 -56.700d1twya_ c.94.1.1 (A:) ABC transporter, periplasmic substrate-binding protein VCA0807 {Vibrio cholerae [TaxId: 666]}  ali model 3D-neighbors follow..  21  1.......................SEITISGSTSVARIMDVLAEKYNQHPETYVAVQGVGSTAGISLLKKGVADIAMTSRYLTESEAQN---TLHTFTLAFDGLAIVVN-QANPVTNLTREQLYGIYKGQITNWKQVG----------NDQKIAVVTREASSGTRYSFESLMGLTKTV----KDREVSDVAPTALVVNSNSMMKTLVNHNTQAVGFISIGSVDKS------VKAIQFEKADPTSDNIA-----------------KHTYQLSRPFLILHYSD--------NADEQTKEFIAFLKSESAKKLIVEYGYIM......................... 248
7 -17.700d2onsa2 c.94.1.1 (A:32-342) Molybdate-binding protein, ModA {Archaeoglobus fulgidus [TaxId: 2234]}  ali model 3D-neighbors follow..  11  1......................NVKLKVFHAGSLTEPMKAFKRAFEEHPNVEVQTEAAGSAATIRKVTELKADVIATADYTLIQKMMYPEFANWTIMFAKNQIVLAYRNDSRYADEINSQNWYEILKR-----PDVRFGFSNPNDD-PYRSLMAIQLAELYYNDPTIFDELVAKNSNLRFSEDNGSYVL-SKIMIRSMEMELIHLVESGELDYFFIYKSVAKQHGFNFVELPVE-------DLSSPDYAELYSKVKVVLANGKEVTGKPIVYGITIP---------KNAENRELAVEFVKLVISEEGQEILRELGQEPLVPPRADTAVPSLKAMVEVS..... 311
8 -15.500d5um2a1 c.94.1.1 (A:51-364) automated matches {Xanthomonas axonopodis [TaxId: 190486]}  ali model 3D-neighbors follow..  1.....................REIGLLNVSYDPTREFYRDYNAAFAAQDTVTVETSHGGSGKQARAVIDGEADVVTLALAYDVDAIAQKAK---NSAPYTSTIVFLVRKGNPK---------------NIHDWPD---------LLRSGVAVVT--KTSGGARWNYLAAWAYADHIFKGDRERILRYMQAVPVLDTGARGATTTFVQRGIGDVLLA---WENEALLAREELGKDKFEIVVPKLSILAEP-------------------SVALVD---------KNVDKHGTREVAEAYLRYLYAPEGQKLAAKHFYRPRHPEFADP................. 272
9 -12.200d3e13x_ c.94.1.1 (X:) Ferric-binding protein FbpA {Campylobacter jejuni [TaxId: 197]}  ali model 3D-neighbors follow..  13  7..............................SARHYNADFEIIKKFEEKTGIKVNHTQAKASELIKRLSNSPADIFITASPVSSKYLEEFDKDKEWFAITKRARIIAYNKNTNIDISKMKDLAKAEFKGEI-----------------------VMRSATAPYSKTLLASIIANDGNKEAKAWAKGVLEN--ATNPKGGDRDQARQVFAGEAKFAVMNTYYIGLLKNSKNPKDVEVGNSLG--------------------------IFPNQDNRGTHINISGIAMTKSSKNQDAAKKFMEFMLSPEIQKILTDSNYFPIRNDV.................... 278
10 -11.300d3pu5a1 c.94.1.0 (A:31-351) automated matches {Bordetella parapertussis [TaxId: 519]}  ali model 3D-neighbors follow..  13  1...................ADDHIYVTSSGGSFLENVRKHMAEPFEKQSGVKVTLVPGTNPAHALKILTPPYDVAAFGAQVDEKSVPSLADEGCGSLYDYSSVGIAYR--------------PDKIQGGVKSWKEFVERTVAGEFGKQVFFNNLSSNVRGAEVLSMFGKIYGSGYGDIEASIATLERMKPHIFKFFTAFNDPVVLLTSGEGAIGPG-FIAEDSTKGMVKWVDPTEGAVSSGPVMAVVKG----------------------------------------GKEDLAKAFMNYALGEEAQKFCEAMYYGAYSEKLKHRLPSIDSVQLVDTALLIK 307
11 -11.200d1xvxa_ c.94.1.1 (A:) Ferric-binding protein FbpA {Yersinia enterocolitica, YfuA [TaxId: 630]}  ali model 3D-neighbors follow..  11  1....................SNDSGIV---NAQHENLVKSWVDGFTKDTGIKVTLRNGGDSELGNQLVASPADVFLTEAPLDAVTQAQVAQEYRPTGIAARSTVFVYNPEKISEAELP------------KSIMD---------LAKPEWKGRWAASPSGADFQAIVSAMLELKGEKATLEWLKAMK---TNFTAYKGNSTVMKAVNAGQIDGGVIYHYYR----FVDQAKTGENSGKTQ--------------------------HYFKHQDPGAFVSISGGGVLASSKHPKEAQEFVKWITGKSGQDILRTNNAFEYAVGVDAASNPKLVPLK........ 284
12 -10.900d1nnfa_ c.94.1.1 (A:) Ferric-binding protein FbpA {Haemophilus influenzae [TaxId: 727]}  ali model 3D-neighbors follow..  10  6..............................NGQQKEAATAVAKAFEQETGIKVTLNSGKSEQLAGQLKEEPADVFYTEAPISEQTIQQTAQKGVPIALSGRSRVVVYDHTKLSEKDME------------KSVLD---------YATPKWKGKIGYVSTSGAFLEQVVALSKMKGDKVALNWLKG-----ENGKLYAKNSVALQAVENGEVPAALINNYYWYNKSRLYFVRHQDPGALVSYSGAAVLK---------------------------------------ASKNQAEAQKFVDFLASKKGQEALVAARAYPLRADV.................... 271
13 -10.900d4eloa_ c.94.1.0 (A:) automated matches {Thermus thermophilus HB8 [TaxId: 300852]}  ali model 3D-neighbors follow..  12  6..............................SGRGQSLVEPLVKQFEAETGIRVQVRYSTDAQILAALQEEGSRLRPLGETLLEKPIAFVPASRTWVPVTVRLRVLAYNPDRIKAEELP------------ESLLD---------LPRFAREKGLVGRVGWTPTYSSFQDMVAGMIALYGEEKTRELAMKALAPKAYPSNPAMLDAIRAGEVDLGSTNHYYVVRFRRAGYRLG----------------------------------HHFRDGDAGNLALVTGAGLLKTSKNLAAATRFLTYLLSPQAQQFVGNIGEYPLVKGV.................... 269
14 -10.300d1q35a_ c.94.1.1 (A:) Ferric-binding protein FbpA {Mannheimia haemolytica [TaxId: 75985]}  ali model 3D-neighbors follow..  11  8..............................SYRQPYLIEPMLKNFEKDTGIKVNIIFADK--GLVDRVKQEGELSPADQKIDSKVLEKNDSNDQWFGLTTRARVIYTSKDRVGKLPAGFDLAKPEYKGKV--------CVRSGKNSYNVSLFAAMIEHYGIEKTKAFLEGLKANLAR----------------KPQGGDRDQVKAIKEGICDYSIGNSYYYWAEAAIINFPSGEHGTHKNISGVVIAK---------------------------------------HSPNKANAVKLIEYLSGEKAQGLYAELNHYPVKEGI.................... 275
15 -9.670d4edpa_ c.94.1.0 (A:) automated matches {Clostridium perfringens [TaxId: 195103]}  ali model 3D-neighbors follow..  3.........................VVSTWGLNEDVLKETVFEPFAKEHGVEIVLDIGNNSERLTKMKNNQIDITYLADKLDYSKIPNASEAGYGPAYTLNSIGIVVDPSAGI---------------EINSWEDLWKPELKNKIAIPDITVEIAAEKAGVDVKTDNGEAAFKELEALKPNVVK------------SKSSDLANMFSNGEIVAAVAAFGTISKAKPEVINVIPESGTYLNFNTININK---------------------------------------NSKNKDLAYEFINYALSKEVQETAKALNESPVNKEVK................... 274
16 -9.420d3r26a_ c.94.1.1 (A:) automated matches {Escherichia coli K-12 [TaxId: 83333]}  ali model 3D-neighbors follow..  11  1.......................GKITVFAAASLTNAMQDIATQFKKEKGVDVVSSFASSSTLARQIEAGA---------------------------------------------------ADLFISADQKWVDKKAIDTATRQTLLGNSLVVVAPKASVQKDFTIDSKTNWTSLLNGGRLAVGDPEHVPAGIYAKEALQKLGAWDTLSPKLAPAE----VRGALALVERNEAPLGIVYGSDAVASKGVK------VVATFPEDSHKKVEYPVAVV----------EGHNNATVKAFYDYLKGPQAAEIFKRYGFT.......................... 229
17 -9.400d4euoa_ c.94.1.0 (A:) automated matches {Agrobacterium fabrum [TaxId: 176299]}  ali model 3D-neighbors follow..  13  3........................VFSSWGGTTQDAQKAAWAEKFMVETGINVLQDGPTDYGKLKMVEANGVTWDVVDSVIDKTKLDPRFVTDYSVGSFYYSFVIGCN--------------VDSVSACPKSWADLFDTAKFPGKRTAPGVIEAALLADGVTADKLYPLDLDRAFKKLDT----------SDIIWWSGGAQSQQLIAS-----AEAPFGSVWNGRMTALEQSGVKVETSWAQN--------------------------ITAADSLVVPK-------GTKNKDAAMKFIALATSAQAQDMATATGYAPVNIESAKLMDPKIAK.......... 278
18 -9.140d1atga_ c.94.1.1 (A:) Molybdate-binding protein, ModA {Azotobacter vinelandii [TaxId: 354]}  ali model 3D-neighbors follow..  14  1........................ELKVVTATNFLGTLEQLAGQFAKQTGHAVVISSGSSGPVYAQIVNGAVFFSADEKSPEKLDNQGFALPGSRFTYAIGKLVLWSAKPGLVDNQGK----------VLAGNGWRHIAISNPQIA-P------------YGLAG--TQVLTHLG---------DKLTAQERIVEANSVGQAHSQTASGAADLGFVALAQIIQAAAKIP---------------------------GSHWFPPANYYEPIVQQAVIT---------KSTAEKANAEQFMSWMKGPKAVAIIKAAGYV.......................... 228
19 -9.080d5ci5a_ c.94.1.0 (A:) automated matches {Pseudothermotoga lettingae [TaxId: 416591]}  ali model 3D-neighbors follow..  16  11.............................QVAELDETWNSVIKTFEEKYGISVEVQLFGFDTYYDKLVTALQAGKGPDEPMEE-PTVTYKKIRYGLPWYTDCRLLLYNKAMFEKAGLNPDN---------KTWDELLDAALKITDTKNRIYGYGVSGTKTEHTTLGYMMFLYAAGGKLLTDDYSKAAFDSPEGLKA---TDLAKKYNVSPNAIQYHEDDYRNMMAQNRVAMA--GGPWSFPLIEAANPDIAGK----------SVALHPYDAKPASVLGGWALVIPSSSPNKEDAWKLAEYLTSFDVWMKWVEEKGGPMPTRMDVCKKSKLAN.......... 332

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;