Scheduled maintenance will begin on May 30th, 2025. Server will be temporarily unavailable — learn more.
current user: public
If you have questions about the server, please let us know.

Query: gi|29345421|ref|NP_808924.1| hypothetical protein BT_0011 [Bacteroides thetaiotaomicron VPI-5482], from B.thetaiotaomicron

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280
# Score Template Links and tools%idFirst MEWGVRFYVLSKQEWKQQTIDRCGQFYCLVPSNAGFHVYLFVTMDTGENAVFVFPPHFFIRYRERYWGKHSTLSGKILRKTYLKDNLVMRYGLQPGSEERVTGARIYSASSHGVALGIVLNDEAYLFKTFITYAMTKGEQIPLYMQEKLSMERAQVEYYNTGRLADLVELEERDRKRREMLMAEERRREEKEKRRAAEPGEAYFYVEGPLTLIMPDEEIQEENTGFWQRGTTMFCDSKLIEESQREMRELASVEARIQELKNIPQKAEEKKGVFKRLFGRYFLast
1 -6.980d1b3ta_ d.58.8.1 (A:) Epstein barr virus nuclear antigen-1 (ebna1) {Epstein-Barr virus [TaxId: 10376]}  ali model 3D-neighbors follow..  21  5..............................................................................................................................................................................................FGKHRGQGGSNPKFIAEGLRALLARSHVERTTDEGTWVAGVFVYGGSKTSLYNLRRGTALAIPQCRLTPLSRLPPGPGPQPGPLRESIVCYF 102
2 -6.280d4emta1 d.387.1.1 (A:155-337) Tyrosinase cofactor MelC1 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  22  6.........................................................................................................................................................................................................AWSYYIGYLRLILPEARIRTYNQHYNNLLRGAVSQR-LLPLDCGVPDNLSMADPNIRFLDKLPQQTGDHAGIKDRVY.... 86
3 -5.800d1io1a_ e.32.1.1 (A:) Phase 1 flagellin {Salmonella typhimurium [TaxId: 90371]}  ali model 3D-neighbors follow..  18  2.............................................................................................................................................................................................................IKG-ISIAQTTEGALNEINNNLQRSTNSQSDLDSI---QAEITQRLN------EIDRVSGQTQ-----FKVLAQ... 84
4 -5.800d1vkha1 c.69.1.32 (A:1-261) Putative serine hydrolase Ydr428c {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  17  24..................................................................................................................................................................................................ISQNTREAVIYIHG----------------GAWNDPENTPNDNTIKSMDTESTVCQYSIEYRLSPEITNPRNLYDAVSNITRLVKEK. 99
5 -5.700d2o8ra3 d.136.1.4 (A:318-505) Polyphosphate kinase, PPK {Porphyromonas gingivalis [TaxId: 837]}  ali model 3D-neighbors follow..  15  30.....................................................................................................................................................................................................VPYYTYDYVVRLLMEAAISPDVSEIRLTQYRVAE----NSSIISQSGKKVSVFVELKARFDEENNLRLSERMRRSGIRIVYS... 113
6 -5.670d4hvya_ d.113.1.0 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  21  16..............................................................................................................................................................................................................QDEVLLI---QEAKRECRGSWY-AGRMEPGETIVEALQRVVKEEAGLHCEPETLLSVEERGPS............. 76
7 -5.500d5e16a_ b.82.3.0 (A:) automated matches {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}  ali model 3D-neighbors follow..  14  67.................................................................................................................................................................................................KQGEKGSYFFIINSGKFDVYVNDKKVKTMGKG------SSFGEAALIHNTQRSATIIAETDGTLWGVQ---------RSTFRATL.... 136
8 -5.420d3shda_ d.113.1.0 (A:) automated matches {Escherichia coli [TaxId: 405955]}  ali model 3D-neighbors follow..  19  10..................................................................................................................................................................................................................CVVHAEGKFLINGKALWN-AGHLEADETLVEAAARELWEETGISAQPQHFIRMHQWIAPDKTPFLRFL.... 83
9 -5.340d1siga_ a.177.1.1 (A:) Sigma70 {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  25  231........................................................................................................................................................................KLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVI---SIAKKYTN---RGLQ-FLD--LIQEG-----NIGLMKA---------DKFEYRRG-YK--FSTY. 318
10 -5.290d1rjlc_ b.76.1.1 (C:) Outer surface protein B {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]}  ali model 3D-neighbors follow..  21  18..............................................................................................................................................................................................................DGKVKVFLNDTAGSNKKTGKWEDSTSTLT----ISADSKKTKDLVSLEGSASEIKNLSELKNALK........... 95
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 9 7   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Jaroszewski L, Li W, Godzik A. A segment alignment approach to protein comparison. Bioinformatics. 2003 Apr 12;19(6):742-9.