current user: public
If you have questions about the server, please let us know.

Query: gi|29345411|ref|NP_808914.1| hypothetical protein BT_0001 [Bacteroides thetaiotaomicron VPI-5482], from B.thetaiotaomicron

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .
# Score Template Links and tools%idFirst MVSTSTHDDAFDFDFGYTGKLQFLVATVDANSTYYTKDPNGIECDNDGSSSSLTPFTHPTISNLTIVGTVNGKVAQSAMGDGKSMKSCANFRRNCQFTLVNSILYGYPTGILCETTNSYVFKNNVVNGVSTTFSGITADATNTAAASAEAIGLTSPWGGYTGLMPNASPANAGADFSELDSWFTTTSYRGAVGGRSNWLTQAWVKLast
1 -6.480[J] COG0198 Ribosomal protein L24  ali follow..  14  6......RDDEVIVDKGKRGKVLKVLADDRLVVGGVNLIKRHTKPNPMLGQQGGIVEKEAPLSNVAIFNTETSKADRVGFKVEDGKKIRVFKSTQK.............................................................................................................. 100
2 -5.560[S] COG1851 Uncharacterized conserved protein  ali follow..  12  37.........GFDLIFG-DGKETYFTVELDERKAGDKFSKDGKEYE--IEVLQELPKNTELYAHIEM--------------------------EMGKAYIVCQLRDEDGKNTEVLRVPAATLLLAFLKKNKLANIIKAIKNVGISLELSMQNGVGGKPLSYEELPNVARRFIRSARKVEKETGFGRLSYYGETKDGEPRYRFSWL. 207
3 -5.550[P] COG3420 Nitrous oxidase accessory protein  ali follow..  14  40AIEKAEPGDVVRLRAGHEGAVV------DRAIELTGEPGAVLDGLGTGNAITVN-APNAIVRGLEVHGSGDNLPDL---------HSGIFVSRTATGAVENNRLIGNTYGIYLHGAADSIAIGNEVLG............................................................................. 154
4 -5.470[M] COG5434 Endopolygalacturonase  ali follow..  8  303...ISTGDDHVAIKASGGATRNLLF------AHNHFYYGHGLSIGSETDGG----VSNMQVTDLAMDGNDSSG------------GNGLRIKSDNNIVYNGICMRNVKEPLVFD........................................................................................... 398
5 -5.450[J] COG3130 Ribosome modulation factor  ali follow..  10  37...................................................................................................................................................................................................RSQWLGGWRE 46
6 -5.270[C] COG4659 Predicted NADH:ubiquinone oxidoreductase, subunit RnfG  ali follow..  16  97.............PDGYSGAIQLIVGADFNGTVLGTRVTEHHETPGLGDKERRLSDWITHFSGKTISGENDTHWAVKKDGGDFDQFTGATITPRAVVNAVKRAGLYAES................................................................................................ 193
7 -5.080[S] KOG4753 Predicted membrane protein  ali follow..  9  1..MYNNGARGFSIHDAFEEETDEAIRVYGSTVISTPMRGKQGRSTEDVSIRIQDPKGYNKYAEDTTSRDSDSLIQEYGNLPTEETNTY-KVRENWRTVLAAFTLLVVGTGLFV............................................................................................ 115
8 -4.880[R] KOG3005 GIY-YIG type nuclease  ali follow..  11  5ILSSDSDDDSFSGDK----KIRFSFGASN------------MSQDTTQEIIPEDTDTVPLTIPSTPALSGKFDSKTPKSVRRRSVS---------------SCFTPIVETINQPPTNQACSSFLQKEYNFHDLSSDEEGGDGGAGCSKDEDKIIEDNLNLRALLSPEKKKRKEKIEEVQNEFYKNRCYIGYIMQHNGGRDKGGAK 216
9 -4.880[A] KOG2634 Initiator tRNA phosphoribosyl-transferase  ali follow..  11  76..........FKSTDGHTNNLSFNTSRLNLHLPLLAGEKGGC-IDSTRKGKDSMSKTIPMVVNRSIFNHWNRLCNIDAVSYNGLTSDDDGDNIRKLLDKWDCSLHLPLWVSNTERASIEARLDEWTRELDESGADIASLASCKTVIWLNEVPEHDSWDFTPLILVSASASGELQNRTSSEFSW---NYIPGAGDDEESWARGWTH 292
10 -4.860[R] COG3979 Uncharacterized protein contain chitin-binding domain type 3  ali follow..  6  408................................DNGTTEPDVTPTPAPVTDENVAPVARIA-SPVSLSAEGSTDANGDKLTYTWMSQDGKTLSGQDKAVVIFNA-TQYVVNLTVSDGTLSSTAVYTLNVKAKAAAADDEDKTTSYPAWSSSQKWNPGDIVNSNGALYQCKPFPEGSWCNVAPAYYEP---GV----GIAWADAWNA 586
FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 9 6 7   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;