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Query: gi|29345413|ref|NP_808916.1| hypothetical protein BT_0003 [Bacteroides thetaiotaomicron VPI-5482], from B.thetaiotaomicron

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKHTLKGWLVDNAVTVDNKEDKILMLESAGSLTLEDILSEMKKEDTGLREETIEHAVKLYHRVLSDLMLSGYSVNTGLFRAVPQFRGVVDGGQWDQKKNSIYVSFTQDKDLREAIAQTSVNILGEKRDAMYIIGGEDAATRATDGMATAGRNYTLNGRLIKVVGEHESVGITLTDASGKVSKLPNDMLVVNNPSQLIILLPSDLTDGHYTLTVTTQYSGTNTLLKTPRSTSKVITIGQSGGSEGGNTSDGNLDENPLGLast
1 -15.100[L] COG0776 Bacterial nucleoid DNA-binding protein  ali follow..  12  2..............................TLTKAELADILVDKVSNVTKNDAKEIVELFFEEIRSTLASGEEIKIGFGNFQLRDKPQRPGRNPKTGEERRVVTFHASQKLKSMVEH............................................................................................................................................. 94
2 -6.770[R] COG2372 Uncharacterized protein, homolog of Cu resistance protein CopC  ali follow..  15  40...................................................................................................................................................AADTTINAAPEALTLGFSEG-SGVKVTGPDNNVVKTGDLKLDPANNTQLILPIGHALAAGKYHVSWHVVSVDG-----HKTKGTYSFTVK..................... 128
3 -6.700[R] COG1342 Predicted DNA-binding proteins  ali follow..  11  49...............................VDIEGLRQEDAASRVGISRRAFWEDLKSARMKVAIALSKGKAIEI...................................................................................................................................................................................... 93
4 -6.700[P] COG5456 Predicted integral membrane protein linked to a cation pump  ali follow..  16  28.................................................................................................................IAVNLTMATLASTSWTGLVVENTYVASQQFNRKAEEGRAQAALGWTGKLTIARSEVRYSLSDTTGKPVPLHGVKILFRHPAY-EFAAQHLPRDGVWIVEVDADAGLTEPYRDVRRI............................. 157
5 -6.190[S] COG3198 Uncharacterized protein conserved in bacteria  ali follow..  9  19....................................................LMAGPIFVVIASVAMFFVAQQHATDLVTDDYYKDGKHIDIQLHRDEEAVRRHIGVQVLISPDMNAAKVFVGGEFDGK-----------------------QPLNLLLMHPTRKADDQTVALKPVGSAQN----------GRAEYEAVFKTLSPTNHWYVRVEDA--AGVWRVENKWITSQGNAVDLTPMDKLFNNTES........ 181
6 -5.840[S] COG1572 Uncharacterized conserved protein  ali follow..  13  318........LTVPLLYAGKDNTIKASIKNIGKDSAYGFQAALYADGEIVSTAPVSS------------LSSGKSKTI-EFNWKPAWDG----------EQALKVYVDYTNKKKET-CEVNNWNSPFLAKVVDLTPPELEIDYPEDGARVDAGYLTVSGT------EDTNRNLTV-DVNGQNALISGESWSASVP----------VVSGPNTIVVSAVDGENNTGRELIVV............................. 498
7 -5.370[S] COG5467 Uncharacterized conserved protein  ali follow..  8  39...........GLLAKSDPEAYASEIVAADFEEVRKIKTDFDAAGVAISEDDIRVRMIELLSEAVAQLQKN........................................................................................................................................................................................... 104
8 -4.990[S] COG4834 Uncharacterized protein conserved in bacteria  ali follow..  14  118..............................DYTTEEL-RQSAFLRKPLNTARADAAMDAYERHINDVALFGEDELTGLYTHPGVPVLLNTAGPWIGQSPAQVL-----ALFNQLISSAWMNTHYVEMIDTVLLPGRVMNYLVSTPRSDNSDKTILH-LENNIAKAERGLDLTVRTETAGEGGTTRAMVYTKNPTKLVLHLPMPIRPKGLRFDIPGEYKYSGVEFRYPKSALYADGI...................... 327
9 -4.790[S] COG4071 Uncharacterized protein conserved in archaea  ali follow..  8  1MSPEYRTVPVVTGYIEPG----------------AGFSEIIERAGELARDGDFLVISETPVS-----VAQGNLVDESRFEPSITAVLLADIWSKYIWGYLLGPILGMKRRTIRNLRRLPPEARAHKEVVLRYYGLKHALKPASEAGI---DLSNVPGTLVSLLPENPSGVA-IAGEILRRFGADVTTVIIDT.................................................................. 169
10 -4.770[U] COG5030 Clathrin adaptor complex, small subunit  ali follow..  8  88.................................IQVFVEALDRCFNNVCELDLVFKFQEIHAILAEVVSGGLVLETNLNEIVLAAQNQMPKTKRSNAMPFSNTLSSFATRF................................................................................................................................................... 165
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 8 6 9   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Awobuluyi M, Yang J, Ye Y, Chatterton JE, Godzik A, Lipton SA, Zhang D. Subunit-specific roles of glycine-binding domains in activation of NR1/NR3N-methyl-D-aspartate receptors. Mol Pharmacol. 2007 Jan;71(1):112-22. Epub 2006 Oct 17.