current user: public |
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Query: gi|29345423|ref|NP_808926.1| hypothetical protein BT_0013 [Bacteroides thetaiotaomicron VPI-5482], from B.thetaiotaomicron |
. 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . 170 . 180 | |||||||
# | Score | Template | Links and tools | %id | First | MIQYNGITLLRDEDGTPMQVNIDLRVHGTELDAFMRAHGLTAQEQSEMLRSVTGEDISPTYVAGGKVQQHVRYLPEMKRQIQTETDRLFVSPRTRPVSVIRKEFPDLLLHRIVRVLTPIPRTKAATPKAFERYCGRDTFWVRFKMQGMMNVTWCVFFTIHDEGIVLVRHLAGAGENDEDL | Last |
1 | -6.160 | [S] COG5501 Predicted secreted protein | ali follow.. | 12 | 83 | ....ESLKLVIDENPAPVAAEIRFGPAMAPLKFETRVRVNQYSNIRAIAETPRGIFMHGRFVSGGCSAPATKDPVAALKDMGEMRLKLFGGKGEVQKARREAQI--MIRHPNYSGLQRDQITQLFVSAKF-KQGDELLFALDGGISISENPVFRFSYTDNGAPDFTVHAVDTDGNVFD.. | 261 |
2 | -5.610 | [F] COG0563 Adenylate kinase and related kinases | ali follow.. | 13 | 14 | ...........................GTQAEKIIEKYGIPHISTGDMFRAAMKNETE-SYMDAGELVPDEVTIGIVRDRLSQDDCQNGFLLDGFPRTVAQAEALEDILASLDKKLDYVINIDVPEQLLMDRLTGR............................................ | 127 |
3 | -5.560 | [F] KOG3078 Adenylate kinase | ali follow.. | 15 | 22 | ..............GPP---------KGTQAPRLAENFCVCHLATGDMLRAMVASGSE-ATMDAGKLVSDEMVVELIEKNLETPLCKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRITGR............................................ | 142 |
4 | -5.550 | [J] COG0242 N-formylmethionyl-tRNA deformylase | ali follow.. | 13 | 53 | YGLRSGVGLAAPQINISKRVNPKIVSHSVQEAYLPTGEGCLSVDDNVAGLVHRHNRITIKAKDIEGNDIQLRLKGYPAIVFQHEIDHL............................................................................................ | 159 |
5 | -5.350 | [K] COG1476 Predicted transcriptional regulators | ali follow.. | 13 | 2 | ...........................KNNIKVYRAIHDLT---QENLAEKVGVTRQTINAIEKGKYDPSLDLAFKLSRLFKASVEDIFLYESNEK.................................................................................... | 67 |
6 | -5.310 | [R] COG5516 Conserved protein containing a Zn-ribbon-like motif, possibly RNA-binding | ali follow.. | 12 | 33 | .....................IDRFDDPAAIDTFAEAANLYGAERNRFGTLVPAKSERRNAFIGLREATDRHFRALVRDLLADLLEAIATVLRQPADTRKGTPLDVATAHSALGLIAGPERERLRSRNRSRTWCDMAVCGNRTKAR.................................. | 174 |
7 | -5.290 | [R] KOG4578 Uncharacterized conserved protein, contains KAZAL and TY domains | ali follow.. | 9 | 354 | ..........................................................................DPSHTLEERVVHWYFSQLDSNSSNDIKREMKPF------KRYVKKKAKPKKCARRFTDYCDLNK-------KVISLPELKGCLGVSKEGRLV.............. | 434 |
8 | -5.020 | [K] KOG4319 DNA-binding nuclear protein p8 | ali follow.. | 18 | 5 | ........FLLPVHG-PQQRNVCFGLDGAELETFFRTN-FQESACADAWPQTAGQCQQAGPQAQTRPPTPISYKEELYRCLYYYCLR--ACGVGRSKGLTLSEQAL--------------RTKRLSPGGHAS................................................ | 126 |
9 | -4.950 | [L] KOG2519 5`-3` exonuclease | ali follow.. | 10 | 74 | RLLEAGIKYVFDGKPPELKRQELAKRYSKRADATADLTGAIEAGNKEDIEKYSKRKVTKQHNDDCKRLLRLMGVPVVEFEKEAEAQCAALCKSGKVYGVASED-MDSLTFGAPKFLRHLMDPSSRKIPVMEFEVAKILEELQLTMDQFIDLCILS-------GCDYCDSIRGIG...... | 255 |
10 | -4.910 | [H] COG0853 Aspartate 1-decarboxylase | ali follow.. | 16 | 3 | ......RTMLGGKIHRATVTEADLNYVGS--QDLLDAAGIYPNEKVAIVNNNNGERFE-TYTIAGKRGSGVICLNGAAARLVQKSDIVIIMSYVQLSEPEIAAHEPKVV....................................................................... | 106 |
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9. Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018. Pawlowski K, Rychlewski L, Zhang B, Godzik A. Fold predictions for bacterial genomes. J Struct Biol. 2001 May-Jun;134(2-3):219-31. Review. |