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current user: public |
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Query: gi|29345430|ref|NP_808933.1| hypothetical protein BT_0020 [Bacteroides thetaiotaomicron VPI-5482], from B.thetaiotaomicron |
. 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 | |||||||
# | Score | Template | Links and tools | %id | First | MDPLSRDENYIQRLTPEMWREIKAASPEVTAEMLDDLKHGNTYYTGVETDKGVLIFSRDIIGEGQFSDYMYKYIENDFFASEFVLKSLAVHELRGWPSLMEGKLNRCHNRFGWWGDGETIRRAFQDRSVLKNVTDSETYDFTPPPHGRTITG | Last |
1 | -6.830 | [P] COG2156 K+-transporting ATPase, c chain | ali follow.. | 10 | 22 | ...........................................YPLLTTVLGQWWFPWQANGSLIREG--QNFTGNGYFHGRPSATAEMPYNPQASGGSNLAVSNPELDKLIAARVAALRAA--VPVELVTASASGLDNNITPQAAAWQI.. | 141 |
2 | -5.830 | [KT] COG3279 Response regulator of the LytR/AlgR family | ali follow.. | 10 | 10 | ...........EQPAREDLRERLNEEHGI--EIVAECSNALEAIPAIQRLQPDVVFLDIQNGLELASMLNPESMPHIVFVTAYDEYAIRAFEEHAFDYLLKP.................................................. | 102 |
3 | -5.700 | [R] COG4996 Predicted phosphatase | ali follow.. | 13 | 7 | LDGTVWDHHDISSLYPPFKRVSPLKIQDNRGAEVTLRKHVRDFLQWAR-NSGHIITTLSWNDFQVAYQALRAFEIDAYFH........................................................................ | 85 |
4 | -5.680 | [V] COG1680 Beta-lactamase class C and other penicillin binding proteins | ali follow.. | 8 | 53 | .............LVVIDGNQRVFRSYGETRPGNNVRPQLDSVVRIASLTKSEMLVKLLDQGTVKLNDPLSKYAPPGARVPTYNGTPITLVNLATHTSALPREQPGGAAHR--------PVFVWPTREQRWKYLSTAKLKAAPGSQAFDLLA | 192 |
5 | -5.590 | [O] KOG0182 20S proteasome, regulatory subunit alpha type PSMA6/SCL1 | ali follow.. | 8 | 10 | .......DRHITIFSPEGRLYQV-------EYAFKAINQGGLTSVAVRGKDCAVIVTQ----KKVPDKLLDSSTVTHLFKITENIG-CVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIG | 142 |
6 | -5.400 | [R] COG2961 Protein involved in catabolism of external DNA | ali follow.. | 7 | 24 | ...............................LIIEAMKEKEKPFLYLDTHAGAGRYQLSGEHAERTGEYLD--------------GIGKLWQRDDLPADLAPYMSAINYFNRGEKLRYYPGSPLIARHLLREDDKIHLTELHSS........ | 122 |
7 | -5.280 | [S] COG3558 Uncharacterized protein conserved in bacteria | ali follow.. | 7 | 2 | ......SRPPVPPFTCKTAIEKVRLAED--------------GWNSRDAAKVALAYTVDTTNREEAQAFLTRKWNR............................................................................ | 66 |
8 | -5.190 | [U] KOG3368 Transport protein particle (TRAPP) complex subunit | ali follow.. | 3 | 55 | ..................SLRNMVKKITADQDQFMSYTTSKYKLHFYETPTNLRLIFITNPKIDSLTHVLQQIYTTLYVE........................................................................ | 116 |
9 | -5.060 | [S] COG2879 Uncharacterized small protein | ali follow.. | 16 | 4 | ............................................SLAKAGKYLGQAAKLMIGMPDYDNYVEHMRVNHFFRERQDARY................................................................. | 56 |
10 | -5.060 | [S] COG1667 Uncharacterized protein conserved in archaea | ali follow.. | 13 | 4 | ...............PKGEVVELGKRGNFRDILKELSATGFTGYLEVSYKRAKVLFSNGKVGEKALEELLGL-----------ESCVVDVYALDEGKVAKALEWN............................................... | 102 |
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9. Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018. Li W, Pio F, Pawlowski K, Godzik A. Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology. Bioinformatics. 2000 Dec;16(12):1105-10. |