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Query: ACL93470.1, from C.crescentus

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MTNAITGAAIVGGVCGQPIKHSMSPVIHNAWIAAAGLDAAYVPFAPAADRFETFVDGLRGGAVRGLNVTIPFKERALAVADTASDLARMAGAANLLVFNEDGSVHADNTDGPGLLGAIAIQAPGFDVTAAPVVILGAGGAARGAVAALLLAGAPRIAVVNRTVARAQDLADTFGEKVVAKGEDALPALLPEAGLIINATSLGLGGGAGPSADLTLTPKTAVVMDMVYKPLRTEFLRRAEAAGRRTVDGLEMLLRQAIPTFETIYGQAPSPKIDVRVLALKLLGEVLast
1 -92.900IDP90792 gene: aroE; shikimate 5-dehydrogenase [Vibrio cholerae O1 biovar eltor str. N16961] VC0056 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  34  1....MASQIDQYAVFGNPINHSKSPFIHTLFARQTQQSMIYTAQCVPVDGFTEAAKHFFAQGGRGCNVTVPFKEEAYRFADRLTERARLAGAVNTLKKLDDGEILGDNTDGEGLVQDLLAQ--QVLLKGATILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAYGE-VKAQAFEQLKQSYDVIINSTSASLDGEL-PAIDPVIFSSRSVCYDMMYGKGYTVFNQWARQHGCQAIDGLGMLVGQAAESFMLWRGLRPGTKQILRELRKNLEGAL 278
2 -92.500IDP02433 gene: aroE; shikimate 5-dehydrogenase [Coxiella burnetii RSA 493] CBU_0010 [Coxiella burnetii RSA 493]  ali follow..  31  2.........DKYAVIGNPVEHSLSPVIFQAFEKQTNHSFDYLKIKAPVNGFAAAVKKFHDEGGKGANITLPFKEEAYQLADKRSQEANEAHVASALQFREDGTIYAVNYDGLGLVQDLTRNH-NITLTQKSILIVGAGGATRGILGPLLNAAPEKIVIVNRTPSKAHALAKIFHLRGEIQGGGFDELEPMRYDVIIHATSLGHQGKF-PPLPDGLIGSQSCCYDLSYGKIASPFLQWAKDQGAKNFDGLGMLVEHNAAVFYLWFGIYPDTNPVIEMLQAHL.... 272
3 -92.400IDP91168 similar to shikimate 5-dehydrogenase (AroD) lmo1490 [Listeria monocytogenes]  ali follow..  30  2.........EKYVVIGNPIRHSLSPAMQNRIFQELGMNAEYNSVLIEEDAFETEIKKLMDSGVRGFNITTPFKERILPFLDELDNLAAASGAVNTVL-KKEDKWYGFNTDGKGYLEGLEEI--RSITEDDSILITGAGGASKAIYLALSTHTDAKITVANRTTEKAIEMTKDNN-NHHAITLEEAEKQLADFTIIIQTTSIGLEASNKSPISLANVKQGTICSDIIYNPAETAFLKEAKKNGAITQNGLPMFVNQGALAFEIWTGIKPERSLMKEAVLEQLGGN. 273
4 -91.100IDP91169 similar to shikimate 5-dehydrogenase lmo0490 [Listeria monocytogenes]  ali follow..  30  5ITERITGHTELIGLIATPIRHSLSPTMHNEAFAKLGLDYVYLAFEVGDKELKDVVQGFRAMNLRGWNVSMPNKTNIHKYLDKLSPAAELVGAVNTVV-NDDGVLTGHITDGTGYMRALKEA--GHDIIGKKMTICGAGGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKIFDIEDHEQLRKEIAESVIFTNATGVGMKPGETLLPSADMLRPELIVSDVVYKPTKTRLLEIAEEQGCQTLNGLGMMLWQGAKAFEIWTHKEMPVDYIKEILF....... 291
5 -90.800IDP91167 gene: aroE; shikimate 5-dehydrogenase STM3401 [Salmonella enterica subsp. enterica serovar Typhimurium]  ali follow..  33  2.........ETYAVFGNPIAHSKSPFIHQQFAQQLDIVHPYGRVLAPINNFINTLDAFFAAGGKGANITVPFKEEAFARSDELTERASLAGAVNTLKRLEDGRLLGDNTDGIGLLGDLERL--NFIRPGLRILLIGAGGASRGVLLPLLSLDC-AVTITNRTASRAEALAKIFAHTGSVHATDMDKLDGCEFDLIINATSSGIRGEI-PAIPASLIHPSLCCYDMFYQKGNTPFLSWCVQQGAKRYDGLGMLVGQAAHAVLLWHGVLPQVEPVIEQLQQELLA.. 272
6 -90.100IDP91170 similar to oxidoreductase lmo2236 [Listeria monocytogenes]  ali follow..  32  1MENRISGTTRLLGLIGTPIDHSKSPIMYNYSFQKAGLDYAYLAFDTPIQKVADTIKAIKTFNLRGANVTMPCKSEVLKHMDDLSPAARMIGAVNTIV-NEDGKLTGHITDGLGFIANLRDA--SVDVAGKKMTIIGAGGAATAIQVQCALDGAKEITIFNIFYDKAKQTVASIKQEVPNCDTEKLNAEITTSDILVNATLVGMHPNEHPISDTSVFRKELIVADIIYNPKKTQLLLDAEAAGCKTVGGLGMLLWQGAEAYKLFTGKDMPVSEVKDLYFN...... 289
7 -89.800IDP91166 gene: aroE; shikimate 5-dehydrogenase STM1359 [Salmonella enterica subsp. enterica serovar Typhimurium]  ali follow..  30  2...DVTAKYELIGLMAYPIRHSLSPEMQNKALEKAGLPYTYMAFEVDNTTFASAIEGLKALKMRGTGVSMPNKQLACEYVDELTPAAKLVGAINTIV-NDDGYLRGYNTDGTGHIRAIKES--GFDMRGKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFAKRVTDLADQHAFTEALASADILTNGTKVGMKPNESLIGDVSLLRPELLVTECVYNPHMTKLLQQAQQAGCKTIDGYGMLLWQGAEQFELWTGKAFPLDYVKQVMGFT..... 287
8 -89.600IDP04636 gene: aroE1; shikimate 5-dehydrogenase [Francisella tularensis subsp. tularensis SCHU S4] FTT0238 [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  28  2........KDLYHVIGFPVKHSLSPAIQMRLAQQYNQDMLFTAIEVAPQDLEAKIQEFKTPQVKGLSVTVPHKERVYALADDADTTAKAVQAASNVIFTAERKMIALNYDGLGIVNDIKNNY-KIDFAGKKVLVVGAGGAAKAVVAAVLKESPLSLSITNRTLAKAKAIEELFKVDTK-IKIIDFDNISDSFDIVINSTSSSIDGKL-LPLKDSNFNKNAFAYDLMYADGGTIFTKWCQAHNIAAADGKGMLKELSIAVFKYWRGL................... 257
9 -88.300IDP04232 gene: aroE; shikimate 5-dehydrogenase [Clostridium perfringens ATCC 13124] CPF_0693 [Clostridium perfringens ATCC 13124]  ali follow..  29  2.........KLFGLIGEKLGHSLSPEIHNKVFKDNNIDGLYNLFSVKKDFENNIVESLKCLGVKGANVTIPYKEKVMDQLDIISHEAKAIGAVNTIL-IKDGKSYGYNTDYYGFGKMLERA--KVNIEGNSFFVLGAGGAARSILKYLEDSKAKKIVLVSRDREKAFKKFKDFNINFMSYG----LEEINEEFALINTTPCGMYPNNSVAVSEKVIKKFKVAVDIVYNPLETKFLKMAKDNGLKTVDGLFMLVGQGVKAEEIWNGIKVDKSTEEDIY-EELKCRF 271
10 -87.400IDP02833 gene: aroE; shikimate 5-dehydrogenase [Bacillus anthracis str. `Ames Ancestor`] GBAA4561 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  29  2........KQLYGVIGNPIGHSLSPVMHNDAFEHLKMDAHYHAFLVKEEVLGEAVRGLKALGISGFNVTTPHKVAIMDYLDEIDPLAKQIGAVNTVV-HKDGKLIGYNTDGIGFVRALQSIS-SEPLQEKRILLLGAGGASRAIYFSLADAGVKEIDVANRTVDKAKELIAACTATVHALSLEKATKEQGNYDIIIQTTTIGMHPREHTPLQISSLKKGTIVSDIIYNPFETKILCEAKEQGAIIQNGIDMFVYQGALAFEMWTGCVPNIERMKQLVIRNLEANI 279
11 -86.700IDP90166 gene: aroE; shikimate dehydrogenase [Clostridium difficile 630] CD1837 [Peptoclostridium difficile 630]  ali follow..  26  2.........NFFGLVGEKLSHSVSPQIHKRVFEILNIESAYKNFEISKEDISKLDGAIKLLGIQGVNVTVPYKERIMKYLDFISPEAKRIGAVNTIL-LRENMLYGYNTDYFGLDSMFKMA--NIDVQGKVAVILGTGGASKAALTYFIDSGIEKLYVSTRKKDDKKLLNSKAIL------IDYEELKHIKGDIILNATPVGMYPNGISPVSKSIIQNFDILIDLIYNPGETEFLRIGNSMGKKTCDGLYMLVGQAIKSQEIWQDTKIDNSILDVIYNELKLEFL 269
12 -85.900IDP90926 gene: aroE; shikimate 5-dehydrogenase [Salmonella typhimurium LT2] STM3859 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  27  1MTKRINKDTQVMSLAARP--SNFGTRFHNYLYEALDLNYLYKAFSP--TDLTQAISGVRGLGIRGCAISMPFKEACIPLVDELDASAQAIHSVNTIV-NTNGHLKAYNTDYIAIARLLANYK---VSPDLVFALRGSGGMAKAVACALKDAGFTRGYIVAIDEASGKQLAELYGYEWRP------DTDGIEADLLINATPIGMAGGDKLSYSEQEVDKASVIFDVVALPPVTPLIRYARERGKTVITGSEVFAIQAVEQFVLYTGIRPDDALFQKAAAWS..... 270
13 -85.700IDP90864 gene: aroE; shikimate 5-dehydrogenase [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj0405 [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  29  2.........KFLAVIGDPISHSKSPRMHNNAIKALGLDSIYTRYHLRNANC--LREDFFKLGLSGANITLPFKEKALDIADVKDDFARNIGSANTLC-LKEDKIYAYNTDALGFLEAIKDF-----DNIKKALILGAGGTALALAYVLKQKGV-EVYIANRSKERFKDFLAYPTYLYKNLQ-------DFDFDLVINSTSAGLKDENDRELLDRILPKAKFAFEVIYGR-ETPFYRLCKEYHLKIKDGLDMLLWQGVFAFELFFEIQDKREMIKNAMQQALILK. 262
14 -82.400IDP90721 gene: aroE; shikimate 5-dehydrogenase [Yersinia pestis CO92] YPO1610 [Yersinia pestis CO92]  ali follow..  24  26....NKDTTVCISLAARP--SNFGTRFHNFLYDALDLDYLYKAFTT--NDLAAAIGGVRALGFRGCAISMPFKEAVIPMVDEMDPSAKAINSVNTLV-NTGGYLKAYNTDYIAIAKLLQEYQ---VPVDNVFALRGSGGMAKAVAFALKNAGFKQGYIIATNEKTGKQLAEQSGYIYRP------DMQNIQADMLINATPVGMAGGDKLAFTETEVDRAKIVFDVVALPAVTPLIRYAQTQGKTVITGAEVFAIQAVEQFVLYTGIRPSQALFEQAAAYAR.... 291
15 -80.600IDP91204 shikimate 5-dehydrogenase [Bacteroides thetaiotaomicron VPI-5482] BT_4215 [Bacteroides thetaiotaomicron VPI-5482]  ali follow..  27  2.........EKYGLIGYPLRHSFSIGYFNEKFRSEGINAEYVNFEI--PNINDFMEVIEEPNLCGLNVTIPYKEQVIPFLNELDRDTAKIGAVNVIKIKGKVKLVGYNSDIIGFTQSIQP---LLQPQHKKALILGTGGASKAVYHGLKNLGI-ESVFVSRTHKTDDMLTYE----------ELTPEIMEEYTVIVNCTPVGMYPKVDPNIPYELLTPNHLLYDLLYNPNVTLFMKKGEAQGAVTKNGLEMLLLQAFAAWEIWH..................... 247
16 -77.000IDP91203 gene: aroE; Shikimate 5-dehydrogenase [Bifidobacterium longum DJO10A] BLD_0429 [Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM 20088]  ali follow..  25  2.......ANHRCAVLGKPVAHSLSPVLHNAAYRSLKLDDLYDKHEVGEDDLDAFLKGLDS-TWAGLSLTMPLKKTIQPYGVPENLWAKELKVANTAVFNGKPGIKLYNTDVIGIQLAFDHAEHHTASRSGTALIIGNGNTATSALAACCMPEIGHIVVAARHPGKNTGLKPVAEKEIELGDDQALLEAARNATYVINTIPGHAADNADALANAGTEPFSGLLLDVIYDPRPTKLMEAWRAHGGHAIGGEEMLLYQALVQVLLMTGIDPPSDADQRLQDTTTEDD. 309
17 -71.200IDP91171 RecName: Full=Shikimate biosynthesis protein AroDE; Includes: RecName: Full=3-dehydroquinate dehydratase; Short=3-dehydroquinase; AltName: Full=Type I DHQase; Includes: RecName: Full=Shikimate dehydrogenase CT_370 [Chlamydia trachomatis]  ali follow..  23  208..ASLSAQSPICALIG-DTSRSIGHLTHNPFFSQLGVACPYIKLPLTPQELPKFFSTIRTQPFLGVSVTSPLKTAVLPFLDKQAPSVKASGSCNTLV-IRQGEIEGHDTDGEGLFSVLMQH--QIPLNNQRVAIIGAGGAAQSIATRLSRANC-ELLIFNRTKAHAEDLASRCQAKAFSLE----ELPLHRVSLIINCLPPSCTIPKA---------VAPCVVDINTIPKHSTFTQYARSQGSSIIYGHEMFTQQALLQFRLWFPTLSFKHLEKTFIRRAAVLA. 471
18 -42.800IDP92648 RecName: Full=Pentafunctional AROM polypeptide; Includes: RecName: Full=3-dehydroquinate synthase; Short=DHQS; Includes: RecName: Full=3-phosphoshikimate 1-carboxyvinyltransferase; AltName: Full=5-enolpyruvylshikimate-3-phosphate synthase; Short=EPSP synthase; Short=EPSPS; Includes: RecName: Full=Shikimate kinase; Short=SK; Includes: RecName: Full=3-dehydroquinate dehydratase; Short=3-dehydroquinase; Includes: RecName: Full=Shikimate dehydrogenase AFUB_013230 [Aspergillus fumigatus A1163]  ali follow..  25 1288.......KKKRFALFGSPISESRSPALHNTLFAEMGLPHEYTRLET--ANVEDVKDFIRAPDFGGASVTIPLKLDIMPLLDEITAEAEIIGAVNTVVPVSDGRLVGHNTDWQGMVQCLRNAGAYGADGSASALVVGGGGTSRAAIYALHQMGFSPIYIVGRNPAKLESMVSTFPTSYNIQIVEGNEKLEHVPHVAIGTIPFERAQEADADASRTIEGSPRVLLEMAYKPRVTALMQLAVDAGWTTIPGLEALIGQGVHQVGLWTGIRPLYERARVCCDILLSGR. 1599
19 -13.800IDP02777 gene: hemA; glutamyl-tRNA reductase [Bacillus anthracis str. `Ames Ancestor`] GBAA4698 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  17  51......NRTEIYAVVDQL--HTGRYYIKKFLADWFQLEIEEVAPYLTIFEQDGAIDHLFRVT-CGLDSMVVGETQILGQIKDSFLEAQQVKATGTIFNETLAKRAHSETTIGESAMSVSYAAVELELTDCHVLILGAGKMGELALQNLYGSGARKVTVMNRTLSKAEIMAEKYMGH--AKPLSELQCALLEADILISSTGA-ITKEMMTKVEKMRSGRPLFMVDILYD---QGVVEANRAERLKEAEKIQFMIEEEIVLFKTWLGVVPLISALRDKALAIQSETM 360
20 -13.500IDP90674 gene: hemA; glutamyl-tRNA reductase [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj0542 [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  13  51......NRVEIVAF----VKMACAEFIVKSLALLCDVDKDILLEKADIFEDSGAIHHLFSVA-SSLDSLVVGETQIAGQLKDAFAFAVKNNFCGVHLSRKCAAKVRNETQISKNSISVASVAVAKDLTQKKAVVIGAGEMGELAAKHLIAAGA-KVIILNRDLQKAKDLCERLGVLSEYDSLENLKKYLNQYEFFFSAT--NAPNAIITNSLIEELSYKRYFFDIVFA---EIVVQKNLALREQEARMAYGIIGRETSEFFRYLALMPIIKAIRLQAKEYADKQL 351
21 -13.000IDP04169 gene: hemA; glutamyl-tRNA reductase [Vibrio cholerae O1 biovar eltor str. N16961] VC2180 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  17  51......NRTEIYCDVRSASKNKVIEWLSQFHQVSLDELKPSLYVHEEQAAIRHLMR------ACGLDSLVLGEPQILGQVKQAYAEARENHAVNPATEKSVAKRVRTETEIGGSAVSVAYAACTLSLADATVLLVGAGETIELVAKHLAGHHCKRMIVANRTRERALSLAQQFGAD--VIALNEIPDYLAQADIVISSTAS-IGKGMVESALKARRHQPMLLVDIAVPRDIEPQVGKLNDAYLYSVDDLQSIVDSNIEQ.......................... 311
22 -13.000IDP91454 gene: hemA; glutamyl-tRNA reductase [Vibrio vulnificus CMCP6] VV1_0254 [Vibrio vulnificus CMCP6]  ali follow..  14  51......NRTEVYCDVKSGARSKVIDWLSQFHQIGLEELKPSLYVYEEQAAIRHLMR------SCGLDSLVLGEPQILGQVKQAYSDSREQQAVDASLEKSVAKRVRTETDIGGNAVSVAYAACTLSLEKSTVLLVGAGETIELVAKHLHANGCSKMIVANRTRERALTLAEQFDAQ--VISLQEIPNHLAKADIVISSTAS-IGKGMVETALKQRRHQPMLLVDILYT---QSIIDSNIEQRKVEAIQAEAIVAEESAAFMSWLQAVDSIREYRQSANEIREDLL 358
23 -13.000IDP90936 gene: hemA; glutamyl-tRNA reductase [Yersinia pestis CO92] YPO2016 [Yersinia pestis CO92]  ali follow..  16  51......NRTELYLSVEQQ--ENLHEQLTAWLCNYHKLSPDDVRQSLYWHHGNDAVRHLMRVA-SGLDSQVLGEPQILGQVKKAFAESQRGQSLSSELERSVAKRVRTETEIGASAVSVAFAACSLSLSELHVLLVGAGETIELVARHLREHQVKHMIIANRTRERAQSLASEVGAE--VITLPEIDARLADADIIISSTAS-IGKGMVERALKTRRNQPMLFIDIAVPRDIEPEVGKLSNAYLYSVDDLQAIIQHNMAQ.......................... 313
24 -12.900IDP02522 gene: hemA; glutamyl-tRNA reductase [Coxiella burnetii RSA 493] CBU_1966 [Coxiella burnetii RSA 493]  ali follow..  21  101...............................................................SGLDSMVLGEPQILGQMKQAYLLARRIGAVGSELGRAATKRIRSETAIGANPVSIAYAVVQLHLNQCQILLIGAGETIELVFSHLYNQGARHFFIANRTLTRAKQIAEPYHAQ--AIRLSDIPTYLPKVDIVISATMSQVGKGAVESALRQRKRRPLFMADLALPRDIEPETAQLEDVYLYNIDDLQTLIAQNRQT.......................... 309
25 -12.600IDP02291 gene: hemA; glutamyl-tRNA reductase [Francisella tularensis subsp. tularensis SCHU S4] FTT0167 [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  17  106...............................................................CGLESMVLGEPQILGQVKDSYTLSKKNHAIGKELDRATAKRVRSETRIGHCPVSVAFSAITLNISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRN-ASAHYLSELPQLIKKADIIIAAVN----VLEYIVTCKYVGDKPRVFIDISIPQALDPKLGELEQNVYYCVDDINAVIEDNKDK.......................... 308
FFAS is supported by the NIH grant R01-GM087218-01
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Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Lukasz Jaroszewski, Zhanwen Li, S. Sri Krishna, Constantina Bakolitsa, John Wooley, Ashley M. Deacon, Ian A. Wilson, Adam Godzik, Exploration of Uncharted Regions of the Protein Universe. Plos Biology. 2009 Sep. 7(9):e1000205