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current user: public |
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Query: ACL93474.1, from C.crescentus |
. 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . | |||||||
# | Score | Template | Links and tools | %id | First | MKVRPMANNPGAKKAIRKIARRTEVNTARRSRVRTFLRKFEDAIAKGDVAVAKAAFVEAQSELMRAVSKGVVHPNTGSRKVSRLAARLKKLDKAAA | Last |
1 | -50.900 | IDP90576 gene: rpsT; 30S ribosomal protein S20 [Vibrio cholerae O1 biovar eltor str. N16961] VC0679 [Vibrio cholerae O1 biovar El Tor str. N16961] | ali follow.. | 40 | 1 | .....MANNKSAKKRAIQAEKRRQHNASRRSMMRTYMKKTVAAIAAGDKEAATAAFAVVTPILDRMATKGLIHKNKAARHKSRFFAAINAL..... | 86 |
2 | -7.030 | IDP90793 gene: glyQ; glycyl-tRNA synthetase subunit alpha [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj0704 [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819] | ali follow.. | 7 | 213 | ............................LNEQFENSYKECKNILEQGLALPAYDYCMLAAHTFNLLDARGAISVAQRQDYMLKIRELSKNCAE... | 277 |
3 | -6.730 | IDP92579 adaptor-related protein complex 3, sigma 2 subunit, putative [Toxoplasma gondii ME49] TGME49_015130 [Toxoplasma gondii ME49] | ali follow.. | 14 | 90 | ................................IQVFVQVLDSCFENVCELDLIYHFDKANFILDEIIVGGLVIETNVDNILQSISSVKKLVDSEAS | 153 |
4 | -6.680 | IDP06256 gene: glyQ; glycyl-tRNA synthetase subunit alpha [Streptococcus pneumoniae TIGR4] NP_345929 [Streptococcus pneumoniae TIGR4] | ali follow.. | 13 | 213 | ............................LLENFDKFEKEAGRALEEGLVHPAYDYVLKCSHTFNLLDARGAVSVTERAGYIARIRNLARVVAK... | 277 |
5 | -6.600 | IDP92605 clathrin coat assembly protein AP17, putative [Toxoplasma gondii ME49] TGME49_113450 [Toxoplasma gondii ME49] | ali follow.. | 10 | 85 | ................................IQLFVEMLDKYFGTVCELDIIFHVDKVYFLLDQFIQAGEIVQTSPKLIVSRAKRL......... | 139 |
6 | -6.260 | IDP92607 AP-4 complex subunit sigma-1, putative [Toxoplasma gondii ME49] TGME49_114420 [Toxoplasma gondii ME49] | ali follow.. | 10 | 85 | ................................IHCLVETLDKFFENVCELDIMFHLEKAHFILDEMVMDGCIVETNKSNVLSLIHMM......... | 139 |
7 | -6.230 | IDP05557 gene: glyQ; glycyl-tRNA synthetase subunit alpha [Listeria monocytogenes EGD-e] lmo1459 [Listeria monocytogenes EGD-e] | ali follow.. | 14 | 174 | ..........................DMLLTLFDTYEREATRQMQDGLVFPAYDYVLKCSHTFNLLDARGVVSVTERAQYIGRIRNLARRIAK... | 240 |
8 | -5.790 | IDP91361 NhaP-type Na+/H+ and K+/H+ antiporters [Vibrio vulnificus CMCP6] VV1_2840 [Vibrio vulnificus CMCP6] | ali follow.. | 10 | 604 | .....APDAEIAVMVRQQVELNKRLTFERIESLRMSFPEIIQALQS--QAATRLLLNRERAVINDQLKQAVLDKPEAQKLLNMVEERMAALQKESI | 692 |
9 | -5.720 | IDP92591 clathrin-associated adaptor complex small chain, putative [Toxoplasma gondii ME49] TGME49_070370 [Toxoplasma gondii ME49] | ali follow.. | 9 | 104 | ................................IHHFVEILDRYFGNVCELDLIFNFHKAYYLLDEIICGGELQETSKKAVLRVMNAQDALMEESNT | 167 |
10 | -5.550 | IDP91683 MYC_HUMAN [Homo sapiens] | ali follow.. | 13 | 344 | .........SPRSSDTEENVKRRTHNRQRRNELKRSFFALRDQIENNEKAPKVVILKKATAYILSVQAEE--EEDLLRKRREQLKHKLEQLRNSCA | 439 |
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9. Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018. Li W, Pio F, Pawlowski K, Godzik A. Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology. Bioinformatics. 2000 Dec;16(12):1105-10. |