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Query: ACL93474.1, from C.crescentus

Results of FFAS03 search in H.sapiens
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .
# Score Template Links and tools%idFirst MKVRPMANNPGAKKAIRKIARRTEVNTARRSRVRTFLRKFEDAIAKGDVAVAKAAFVEAQSELMRAVSKGVVHPNTGSRKVSRLAARLKKLDKAAALast
1 -7.100sp|A8MVJ9|YI028_HUMAN Putative UPF0609 protein C4orf27-like OS=Homo sapiens PE=1 SV=1  ali follow..  14  240...RELPETDADLKRI-VEAASDDERRKAFAPIQEMMTFVQFANDECDHKVAGQLLPLAYNLLKRNLFAEIMKDHLANRRKENID........... 343
2 -6.600sp|Q9NWY4|CD027_HUMAN UPF0609 protein C4orf27 OS=Homo sapiens GN=C4orf27 PE=1 SV=2  ali follow..  15  239...RELPETDADLKRI-VEAASDEERLKAFAPIQEMMTFVQFANDECDHKVAGQLLPLAYNLLKRNLFAEIIEEHLANRSQENID........... 342
3 -6.220sp|Q9Y587|AP4S1_HUMAN AP-4 complex subunit sigma-1 OS=Homo sapiens GN=AP4S1 PE=2 SV=1  ali follow..  10  84................................IHNFVEVLDEYFSRVSELDIMFNLDKVHIILDEMVLNGCIVETNRARILAPLLIL......... 138
4 -6.040sp|Q8N0X7|SPG20_HUMAN Spartin OS=Homo sapiens GN=SPG20 PE=1 SV=1  ali   14  1.....MEQEPQNGEPAEIKIIREAYKKAFL-----FVNKGLNTDELGQKEEAKNYYKQGIGHLLRGISISS-GWESARQMQQKMKETLQNVRT... 90
5 -5.780sp|Q5TAH2|S9A11_HUMAN Sodium/hydrogen exchanger 11 OS=Homo sapiens GN=SLC9A11 PE=2 SV=1  ali   19  199..........................................VIALKTKQAIRNVIAKALKNLTFLCSRGIIDKHEVIEINKVLLKKLKALNN... 249
6 -5.670sp|P61966|AP1S1_HUMAN AP-1 complex subunit sigma-1A OS=Homo sapiens GN=AP1S1 PE=1 SV=1  ali follow..  9  84................................IHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMGGDVQDTSKKSVLKAIEQA......... 138
7 -5.600sp|O43147|SGSM2_HUMAN Small G protein signaling modulator 2 OS=Homo sapiens GN=SGSM2 PE=1 SV=4  ali   13  2..................GSAEDAVKEKLLWNVKKEVKQIEEAVTRKFVHEDSSHIIALCGAVEACLLHQLRRRAAGFLRSDKMAALFTKVGK... 77
8 -5.600sp|Q15149|PLEC_HUMAN Plectin OS=Homo sapiens GN=PLEC PE=1 SV=3  ali   14  246...............VHEAVKAGVVGPELHEQLLSAEKAVTGYRDPYSGSTIS---------LFQAMQKGLVLRQHGIR................. 300
9 -5.590sp|Q14582|MAD4_HUMAN Max dimerization protein 4 OS=Homo sapiens GN=MXD4 PE=2 SV=2  ali follow..  13  43.........KAAGLVRKAPNNRSSHNKHRRAKLRLYLEQLKQLVPDSTRHTTLSLLKRAKVHIKKLEEQD--IKEQLQQEHRFLKRRLEQLSVQSV 138
10 -5.580sp|P56377|AP1S2_HUMAN AP-1 complex subunit sigma-2 OS=Homo sapiens GN=AP1S2 PE=1 SV=1  ali follow..  9  83................................IHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLLGGEVQETSKKNVLKAIEQA......... 137
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Li W, Godzik A. In search for more accurate alignments in the twilight zone. Protein Sci. 2002 Jul;11(7):1702-13.