current user: public

If you have questions about the server, please let us know.

Query: ACL93480.1, from C.crescentus

Results of FFAS03 search in H.sapiens
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .  310    .  320    .  330    .  340    .  350    .  360    .  370    .  380    .  390    .  400    .  410    .  420    .  430    .  440    .  450    .  460    .  470    .  480    .  490    .  500    .  510    .  520    .  530    .  540    .  550    .  560    .  570    .  580    .  590    .  600    .  610    .  620    .  630    .  640    .  650    .  660    .  670    .  680    .  690    .  700    .  710    .  720    .  730    .  740    .  750    .  760    .  770    .  780    .  790    .  800    .  810    .  820    .  830    .  840    .  850    .  860    .  870    .  880    .  890    .  900    .  910    .  920    .  930    .  940
# Score Template Links and tools%idFirst MPRRLRPTRLEHVVDGHALRARLSAAALDSIGNEAEQRARAIDILKQALFRGRMIAKERLENGASGVETSRLLSGVTDEVITALYDFTTVHVFRARNPTEGERLCLLAVGGYGRGTLAPFSDIDLLFLRPYKQTPHAESVIEYMLYALWDLGFKVGHASRTIEECVRLSKEDFTIRTSILEARRLTGDERLAEDLKKRFRDEVMKATGAQFVAAKLKERDDRQARAGASRYMVEPNVKEGKGGLRDLHTLMWIAEYLHPVDRPEDVFKMEVFSIRETKAFIRAFDFLHAVRAHLHFTTGRPEERLTFDLQPEIARRMGYGDRGDAPAVERFMRRYFLIAKEVGTLTRAFSAKLEAEHFKNEPKGISRFLPGARPKRKALDVEGFYEDGGRLNIEGQEIFEADPVNLIRLFKIADERDLDLHPDAFTAVTRALPLITSRVRRDPDACRAFLDLLARGKRSYRTLTLMNDAGVLGRFIPEFGRVVAQMQFNMYHSYTVDEHTLRAVGVIGDIAAGRLVDDHPLAVSIMPLIEDREALFLAMLLHDTGKGGVGGQEKAGARSARSACERLGVERSKVELVAWLVENHLVMSDFAQKRDVSDPGTVAAFARIVENPERLRLLLVITVADIRAVGPGVWNGWKGQLLRELYNATEAVFRGGRGSDAAANVQRHQESTAEAARAALLETDPAAKGWVAAMENAYFSAFSQDDLFHHAELARRAAIQGGAAAEGQVRPGSNAAEVVIAAKDRRGLFADLALAISSLGGNVVGARVFTSRQGQALDVFYVQDVTGAPFGCENPRALRRLADALEAAGKGDALAVEPRRGSEQTRAAAFAIAPSVTIDNDASNDATVVEASGRDRPGLLHALAKTLADSALSIQSAHIDGYGERAVDAFYVQTTEGGKVTDTRKLNALKADLLAALEQNEASAPAARPGLRRARASVARLast
1 -9.160sp|Q96Q11|TRNT1_HUMAN tRNA-nucleotidyltransferase 1, mitochondrial OS=Homo sapiens GN=TRNT1 PE=1 SV=2  ali follow..  13  53...................................................................................................VKENHELRIAGGAVRDLLNKPQDIDFA--TTATPTQMKEMFQSAGIRMINNRGEKHG----TITARLHEENFEITTIDVTTDGR----------------------HAEVEFTTDWQKDAERRDLTINSMFLGFDGTLFDYFNGYEDLKN---------------------------------------KVRF-----VGHAKQR----------------------------------------------------------------------------------------------IQEDYLRILRYFRFYGRIVDDHDPETLEAIAENAKGLAG---SGERIWVELKKILVGN-HVNHLIHLIYDLDVAPYIGLPANASLEEFDK---------------------------------VSKNVDGFSPKPVTLLASLFKVQDD-------------VTKLDLRLKIAKEEKNLGLFIVKNRKDLIKATDSSDP---TRVCELLKYQGEHCLLKEMQQWSIPPFPVSGHDIRK--SGKEIGALLQQLREQWKKSGYQMEKDELLSYIKK............................................................................................................................................................................................................................................................................. 433
2 -8.950sp|Q13946|PDE7A_HUMAN High affinity cAMP-specific 3`,5`-cyclic phosphodiesterase 7A OS=Homo sapiens GN=PDE7A PE=1 SV=2  ali follow..  12  174.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TFHLFSLHGLIEYFHLDMMKLRRFLSQNPYHNAV---HAADVTQAMHCYLKE---------PKLANSVTPWDILLIAAATHDL------DHPGVNQPFLIKTNHYLATLYKNTSVLE---NHHWQIGALILATDIS--EYLSLFRSHLDRGDHLVLQMALKCADICNPCRELSKQWSEKVTEEFFHQ.................................................................................................................................................................................................................................................................................................... 387
3 -8.920sp|Q9Y3Z3|SAMH1_HUMAN SAM domain and HD domain-containing protein 1 OS=Homo sapiens GN=SAMHD1 PE=1 SV=2  ali   11  113.............................................................................................................................................................................................................................................................................................................................................................................................................................................DTMKVINDPIHGHIELHPLLVRIIDTPQ--FQRLRYIKQLGGGYYVFPG-------ASHNRF------EHSLGVGYLAGCLVHALGEKQ----PELQISERDVLCVQIAGLCHDLGHG---SHMFDGRFIPLARPEVKWTHEQGSVMMFEHLINSNGIKPVMEQYGLIPEEDICFIKEQIVESPVEDSLW................................................................................................................................................................................................................................................................................................................................. 285
4 -8.750sp|P51160|PDE6C_HUMAN Cone cGMP-specific 3`,5`-cyclic phosphodiesterase subunit alpha` OS=Homo sapiens GN=PDE6C PE=1 SV=2  ali   12  66....................................................................................................................................................................................................................................................................................................................................................................................................................................................................LTEHGLIKCGIRLFFEINVVEKFLTRW-TVRKGYRAVTYHNWR---HGFNVGQTMFTLLMTGR------LKKYYTDLE---AMLAAAFCHDIDRGTNNLHLEYSKTLLQDESLNINLNKRQFETVIHLFEVAIIATDLAACEQMQTEEEAIKYVTVDPTKKEIIMAMMMTACDLSAITKEVQSQVALMVANEFWEQ.................................................................................................................................................................................................................................................................................................... 298
5 -8.670sp|O76083|PDE9A_HUMAN High affinity cGMP-specific 3`,5`-cyclic phosphodiesterase 9A OS=Homo sapiens GN=PDE9A PE=1 SV=1  ali follow..  15  266....................................................................................................................................................................................................................................................................................................................................................................................................................................................................WEPNEMLSCLEHMYHDLGLVRDFLRRW-CVHDNYRNNPFHNFR---HCFCVAQMMYSMVWL---------CSLQEKFSQTDILMTAAICHDL------DHPGYNNTYQINARTELAVRYNDISPLE---NHHCGMITLILATDMA--EIMDSFKEKMENFDTLLKMILIKCCDISNEVREVAEPWVDCLLEEYFMQSDREKSEG............................................................................................................................................................................................................................................................................................ 495
6 -8.630sp|Q13370|PDE3B_HUMAN cGMP-inhibited 3`,5`-cyclic phosphodiesterase B OS=Homo sapiens GN=PDE3B PE=1 SV=2  ali   13  100.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................MYTLFQDTGLLEIFIPTFRALENGYRDIPYHNRI---HATDVLHAVWYLSSKSCSNPDESYGCLSSNIPALELMYVAAAMHDY------DHPGRTNAFLVATNAPQAVLYNDRSV---LENHHAASAWNLYLSR-PEYNFLLHLDHVEFKRFRFLVIEAILATDLK......................................................................................................................................................................................................................................................................................................................... 296
7 -8.580sp|P35913|PDE6B_HUMAN Rod cGMP-specific 3`,5`-cyclic phosphodiesterase subunit beta OS=Homo sapiens GN=PDE6B PE=1 SV=2  ali   14  70.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GIQMYYELGVVRKFLVRF-SISKGYRRITYHNWR---HGFNVAQTMFTLLMTGK------LKSYYTDLE---AMVTAGLCHDIDRGTNNLHLEFGKFLLSEETLNINLNRRQHEHVIHLMDIAIIATDLAESKNYQDKKSWVEYLSLETTRKEIVMAMMMTACDLSAITKEVQSKVALLVAAEFWEQ.................................................................................................................................................................................................................................................................................................... 293
8 -8.570sp|P54750|PDE1A_HUMAN Calcium/calmodulin-dependent 3`,5`-cyclic nucleotide phosphodiesterase 1A OS=Homo sapiens GN=PDE1A PE=2 SV=2  ali follow..  13  180.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................IYELFTRYDLINRFKIPVSCLITFAE-NPYHNLI---HAADVTQTVHYIMLH---------TGIMHWLTELEILVFAAAIHDY------EHTGTTNNFHIQTRSDVAILYNDRSV---LENHHVLVIEMVLSTDMS--QQIKNIRNSLQIDRAKTMSLILHAADISHPAKKLHYRWTMALMEEFFLQGDKEAELG............................................................................................................................................................................................................................................................................................ 399
9 -8.450sp|Q01064|PDE1B_HUMAN Calcium/calmodulin-dependent 3`,5`-cyclic nucleotide phosphodiesterase 1B OS=Homo sapiens GN=PDE1B PE=1 SV=2  ali follow..  14  184.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................VFELLTRHNLISRFKIPTVFLMSFLD-NPYHNQI---HAADVTQTVHCFLLR---------TGMVHCLSEIELLIFAAAIHDY------EHTGTTNSFHIQTKSECAIVYNDRSV---LENHHILVIEMVLATDMS--QQVKTMKTALQQLERKALSLLLHAADISHPTKLVHSRWTKALMEEFFRQGDKEAELG............................................................................................................................................................................................................................................................................................ 403
10 -8.390sp|P16499|PDE6A_HUMAN Rod cGMP-specific 3`,5`-cyclic phosphodiesterase subunit alpha OS=Homo sapiens GN=PDE6A PE=1 SV=4  ali   13  72.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GIQMYYELKVVDKFLVRF-SLSKGYRKITYHNWR---HGFNVGQTMFSLLVTGK------LKRYFTDLE---AMVTAAFCHDIDRGTNNLHLEFGKTLLRDESLNINLNRRQHEHAIHMMDIAIIATDLALY------KKRTMFQKIVDQSKEIVMAMMMTACDLSAITKEVQSQVALLVAAEFWEQ.................................................................................................................................................................................................................................................................................................... 295

FFAS is supported by the NIH grant R01-GM087218-01
1 3 6 9 2 4   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Shiryaev SA, Ratnikov BI, Chekanov AV, Sikora S, Rozanov DV, Godzik A,Wang J, Smith JW, Huang Z, Lindberg I, Samuel MA, Diamond MS, Strongin AY. Cleavage targets and the D-arginine-based inhibitors of the West Nile virus NS3 processing proteinase. Biochem J. 2006 Jan 15;393(Pt 2):503-11.