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Query: ACL93485.1, from C.crescentus

Results of FFAS03 search in H.sapiens
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .  310    .  320    .  330    .  340    .
# Score Template Links and tools%idFirst MTPYDDSPAQAVSTAPRTTGPSLIDGFGRAVTYLRVSVTDRCDLRCVYCMAEHMTFLPKAEVLTLEELDRLASTFVGLGVRKLRLTGGEPLVRKGFIGLVARLSRHLSSGALDELTLTTNGSQLERYASDLARHGVRRINVSLDTLKPALFRALTRGGDVTRVIAGIDAAQAAGMTVKINAVALKHDNAGEIPALIQWAHGRGCDITLIETMPLGEVDQDRTDQFLSLQDVRRDLSSFWTLTDIPDSTGGPARYVHVAETGGRLGLITPLSNHFCDTCNRVRLTCTGTLHTCLGRDDASDLRAEIRRGASDAELVDAIHLAIGAKPKGHDFQIAAAQPAVARHMSTTGGLast
1 -82.200sp|Q9NZB8|MOCS1_HUMAN Molybdenum cofactor biosynthesis protein 1 OS=Homo sapiens GN=MOCS1 PE=1 SV=3  ali   32  40.SEEVSRRRQFLREHAAPFSAFLTDSFGRQHSYLRISLTEKCNLRCQYCMPEGVPLTPKANLLTTEEILTLARLFVKEGIDKIRLTGGEPLIRPDVVDIVAQLQ---RLEGLRTIGVTTNGINLARLLPQLQKAGLSAINISLDTLVPAKFEFIVRRKGFHKVMEGIHKAIELGYPVKVNCVVMRGLNEDELLDFAALTEGLPLDVRFIEYMPFDGNKWNFKKMVSYKEMLDTVRQQWPELEKVPEEESSTAKAFKIPGFQGQ...................................................................................... 300
2 -78.600sp|Q9NZB8|MOCS1_HUMAN Molybdenum cofactor biosynthesis protein 1 OS=Homo sapiens GN=MOCS1 PE=1 SV=3  ali   30  1..................................................................................................................IGVTTNGINLARLLPQLQKAGLSAINISLDTLVPAKFEFIVRRKGFHKVMEGIHKAIELGYPVKVNCVVMRGLNEDELLDFAALTEGLPLDVRFIEYMPFDGNKWNFKKMVSYKEMLDTVRQQWPELEKVPEEESSTAKAFKIPGFQGQISFITSMSEHFCGTCNRLRITADGNLKVCLFGNSEVSLRDHLRAGASEQELLRIIGAAVGRKKRQHAGMFSI-SQMKNRPMILIEL 235
3 -56.500sp|Q8WXG1|RSAD2_HUMAN(removed signalp:1-15) Radical S-adenosyl methionine domain-containing protein 2 OS=Homo sapiens GN=RSAD2 PE=1 SV=1  ali follow..  14  27LATKRRKQQLVLRGPDETKEEEEDPPLPTTPTSVNYHFTRQCNYKCGFCFHTA----KTSFVLPLEEAKRGLLLLKEAGMEKINFSGGEPFLQDRGEYLGKLVRFCKVELRLPSVSIVSNGSLIRERWFQNYGEYLDILAISCDSFDEEVNVLIGRGQGKKNHVENLQKLRRWRVAFKINSVINRFNVEEDMTEQIKALNPVRFQCLLIEGENCGEDALREAERFIGDEEFERFLERHKEVSCVPESNQKMKDSYLILDEYMR--FLNCRKGRKDPSKSILDVGVEEAIKFSGFDEKMFLKRGGKYIWSKADLKLD................................. 345
4 -32.400sp|Q6NUM6|TYW1B_HUMAN tRNA wybutosine-synthesizing protein 1 homolog B OS=Homo sapiens GN=TYW1B PE=2 SV=2  ali   10  43................................CMETTPSLACANKCVFCWWHHNNPVGTEWLWKMDQPEMILKEAIEMTVKHCALSLGEPIMYPEINRFLKLLHQCK------SSFLVTNAQFPAEIR---NLEPVTQLYVSVDASTKDSLKKIDRKDFWQQFLDSLKALAVKQQRTVYRLMLVKAWNVDELQAYAQLVSLGNIEVKGVTYCRESSASSLTMAHVPWHEEVVQFVRE-------------------LVDLIPEYEIACEHEHSNCLLIAHRKFKIGG.............................................................. 300
5 -28.700sp|Q9NV66|TYW1_HUMAN tRNA wybutosine-synthesizing protein 1 homolog OS=Homo sapiens GN=TYW1 PE=1 SV=2  ali   15  107................................CMETTPSLACANKCVFCWRHHTNPVGTEWRWKMDQPEMILKEAIEMTVKHCALSLGEPIMYPEINRFLKLLHQCK------SSFLVTNAQFPAEIR---NLEPVTQLYVSVDASTKDSLKKIDRKDFWQRFLDSLKALAVKQQRTVYRLTLVKAWNVDELQAYAQLVSLGNPD................................................................................................................................................ 298
6 -23.300sp|Q9NZB8|MOCS1_HUMAN Molybdenum cofactor biosynthesis protein 1 OS=Homo sapiens GN=MOCS1 PE=1 SV=3  ali   38  1.......................................................................................................................................................................................................................................................................ISFITSMSEHFCGTCNRLRITADGNLKVCLFGNSEVSLRDHLRAGASEQELLRIIGAAVGRKKRQHAGMFSISQMKNR........ 78
7 -20.500sp|Q9NV66|TYW1_HUMAN tRNA wybutosine-synthesizing protein 1 homolog OS=Homo sapiens GN=TYW1 PE=1 SV=2  ali   10  4..........................................................QNMIKQFKGVPGVKRFEEGMTVKHCALSLGEPIMYPEINRFLKLLHQCK------SSFLVTNAQFPAE-IRNLEPVTQ--LYVSVDASTKDSLKKIDRPDFWQRFLDSLKALAVKQQRTVYRLTLVKAWNVDELQAYAQLVSLGNIEVKGVTYCGESSASSLTMAHVPWHEEVVQFVHE-------------------LVDLIPEYEIACEHEHSNCLLIAHRKFKIGGEWWTWIDYNRFQELDSGGSKTFSAKDYMARTPHWALFGASERGFDPKDTRHQRKNKSKAISG 281
8 -16.200sp|Q9HA92|RSAD1_HUMAN Radical S-adenosyl methionine domain-containing protein 1, mitochondrial OS=Homo sapiens GN=RSAD1 PE=2 SV=2  ali follow..  14  43................................YVHWPY---CEKRCSYCIPRRLEEAAMQKCL-VTEAQTLLRLSGVQRVESVFFGGGTPSL-HTVAAVLEAVAQAAHLPADLEVTLEANTSAPGSRLAEFGAAGVNRLSIGLQSLDDTELRLLGRTHSACDALRTLAEARRLFPG-RVSVDLMLGLPAQQVGPWLGLQELLHHCDDHLSLYQLSLERGTALFAQVQRGAL-----------PAPDPELAAEMYQRGRAVLREAGFHQYEVSNFARNGALST................................................................... 285
9 -15.900sp|O43766|LIAS_HUMAN Lipoyl synthase, mitochondrial OS=Homo sapiens GN=LIAS PE=2 SV=3  ali follow..  13  133.....................................MGDTCTRGCRFC---SVKTARNPPPLDASEPYNTAKAIAEWGLDYVVLTDRDDMPDGGAEHIAKTVSYLKERNPKILVECTPDFRGDLKAIEKVALSGLDVYAHNVETV-PELQSKVRDPRANFD-VLKHAKKVQPDVISKTSIMLGLGENDEQVYATMKALREAD-----VDCLTLGQYMQPTRRHLKVEEYI------------------TPEKFKYWEKVGNELGFHYTASGPL------VRSSYKA.............................................................. 355
10 -14.700sp|Q6NUM6|TYW1B_HUMAN tRNA wybutosine-synthesizing protein 1 homolog B OS=Homo sapiens GN=TYW1B PE=2 SV=2  ali   15  194.................................METTPSLACANKCVFCWWHHNNPVGTEWLWKMDQPEMILKEAIEMTVKHCALSLGEPIMYPEINRFLKLLHQCK------SSFLVTNA.................................................................................................................................................................................................................................... 300
11 -11.600sp|Q9H9T3|ELP3_HUMAN Elongator complex protein 3 OS=Homo sapiens GN=ELP3 PE=1 SV=2  ali follow..  12  73...................MPKLKAKPIRTASGIAVVAISFTGNICVYCSTQSYTGYEPTSMRAIHRIEQLKQLGHSVDKVEFIVMGGTFMAEEYRDYFIRNLYSERSLTKCIGITIETRDYCMKRHLSDMLTYGCTRLEIGVQSVYEDVARDTNRGHTVKAVCESFHLAKDSGFKVVAHMMPLPNVGERDIEQFTEFFENPAFRPDGLKLYPT---------LVIRGTGLYELWKS----------------RYKSYSPSDLVELVARILALVPPWTRVYRVQRDIPMPLVSSGVEHGNLRELALA.......................................... 389
12 -11.600sp|Q6NUM6|TYW1B_HUMAN tRNA wybutosine-synthesizing protein 1 homolog B OS=Homo sapiens GN=TYW1B PE=2 SV=2  ali   9  2...........................................................................................................................FPAEIRNLEPV--TQLYVSVDASTKDSLKKIDRKDFWQQFLDSLKALAVKQQRTVYRLMLVKAWNVDELQAYAQLVSLGNIEVKGVTYCRESSASSLTMAHVPWHEEVVQFVRE-------------------LVDLIPEYEIACEHEHSNCLLIAHRKFKIGGEWWTWIDYNRFQELIQEYEDSGGSKTFSAKDYMARTPHANERSFDPKDTRHQRKNKSKAISG 217
13 -10.600sp|Q5VV42|CDKAL_HUMAN CDK5 regulatory subunit-associated protein 1-like 1 OS=Homo sapiens GN=CDKAL1 PE=1 SV=1  ali follow..  13  208...................................ISINTGCLNACTYCKTKHAR--GNLASYPIDELVDRAKQSFQEGVCEIWLTSED--IGTNLPTLLWKL--VEVIPEGAMLRLMTNPPYILEHLEEMAKILYAFLHIPVQSASDSVLMEMKREYCVADFKRVVDFLKEKVPGITIATDIICGFTDQDFQETVKLVEEYKFPSLFIEQVPAQVKKQRTKDLSRVFHSYSPYDHKIGERQQVLVTEESFDSKFYVAHNQFYEQVLVPKNPAFMGKMVEVDIYE................................................................ 481
14 -9.590sp|Q96SZ6|CK5P1_HUMAN CDK5 regulatory subunit-associated protein 1 OS=Homo sapiens GN=CDK5RAP1 PE=1 SV=2  ali   14  102...................................VSIMRGCDNMCSYCIVPFTRGRERSRPIALEEVKKLSEVLGLQGLKEVTLLGQN---KQGGLRFAHLLDQVSRVDPEMRIRFTSP--FPDEVLQLIHER-CKQIHLPAQSGSSRVLEAMRRGYSREAYVELVHHIRESIPGVSLSSDFIAGFCGE............................................................................................................................................................... 299
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;