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Query: ACL93469.1, from C.crescentus

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSLTPVTLASQSSARQMILKNAGVAFEAVSPGVDEDAAKAGLLAEDVTPRDIADALAEMKAVKVSTKRPGLVIGADQTLDLKGRLIDKAGSLDEARARLLELRGTTHKLHSAVVVARDGRPIWRIVESAKLSVRPFSDAWLDRYIERRGEALLWSVGCYELESEGVQLFDKIEGDYFTILGLPLVGLLDFLRLHGALTVLast
1 -4.840HGC00789 gi|163310627|dbj|BABD01000073.1|7.0 TMP01036;  ali follow..  1...............................................................MAVSAPPILKTLKTKDMIAKTILQQ------GGKRFTAMTGSRDFIDMGNGLRMSLARNKTSANRLDIIYDEGADLYNMRFYRRTFSKKTFECKTKDIAVHEGIYFDMLEEMFTMVTGLYT............... 116
2 -4.250HGC00044 gi|162658718|dbj|BAAX01000887.1|1.0 TMP00920;  ali follow..  13  44......................GLSYTTFTQEIQGQPEISVNIDSETGAPQAYATFN------VKVTNTGKVPGKTSVQIY----GQAPYTEGGLEKVAIQLLNKSSELAPG--------------ASEIVSV-KVDLQYIASY-DMEHDNGDGTTGTYVLD----------PGTYYFAAG.................. 168
3 -3.980PB005346 A0R807_PELPD/1-258 PB005346; Pfam-B_5346;  ali follow..  10  4................SLFWAIDIKNQFHHNWMGMSQINQTTSGNFYSHRNITDQVLENFTDALDCLTAHLMLECSEVLA-------KPAN-------LISIVNRTRPCGRNLYLLWQQHHTDLAQRLNNLNFMVLDHVRLEHHLSHPGIRTLLHKAGYKDDADCEGMLLELRSRIGGFIGYPAKDVAAFMGLVR.... 192
4 -2.410PB083081 gi|160890648|ref|ZP_02071651.1| hypothetical protein BACUNI_03093 [Bacteroides uniformis ATCC 8492]gi|156859647|gb|EDO53078.1| hypothetical protein BACUNI_03093 [Bacteroides uniformis ATCC 8492]  ali follow..  17  33....................................................................................................TIWGEVVDEATGKRVLTDQGSEGIRVRLTELSWGDNVQHNPDFYCMMDGTFQNTKIGEYNVR..................................... 96
5 -2.110HGC00915 gi|162810474|dbj|BABA01034235.1|2.0 TMP01234;  ali follow..  1.......MSKKKRGEERMKEEDNISFKVPEGYFEN----TSEVMGKLPEKEGPAFEEVKQPMMWIRMKPLLYMAAMFIGAA-------------IIRVASSNHQPTTAGDHLTANEAATEVVSDEYIDVALDRSMLDDYSLSVYLSDATAE................................................ 137
6 -2.070HGC00878 gi|162869432|dbj|BABB01000575.1|7.0 TMP01167;  ali follow..  10...............................................................................................................................................HARTENKTDLDKIEDFLDDTFSEFTNDSVDAEFSSRWVYPEEEIKKLVESL..... 63
7 -1.990HGC00267 gi|163310129|dbj|BABD01000566.1|6.0 TMP00066;  ali follow..  4........KEVSEMQEEMMTVLVVE-APYVKHIPNEL-------------EDLQQAVGGDIEMTYPFDDEVGILLNG----NGKFEGLPLN-----RALYDDHGQVYDAIAGTFLV---------VGLTEDDFTSLTPEQIEKFKEK.................................................... 113
8 -1.850PB009661 _Gut.Meta.Jp.0000785_ gi|162567239|dbj|BAAU01000237.1||2 (- 3549:4008~0 complete)  ali follow..  16  14................DFCRKRGLEFYAVNSNMPEEEADMSALRSRK-------------------------VSAD--MYIDDRNLGGLPDWGVIYEMVHNRWS............................................................................................... 74
9 -1.780PB001934 Q6PSL5_CHLRE/821-1150 PB001934; Pfam-B_1934;  ali follow..  76....RLLRPQAQVMEEAIATVLSVRLDLDAARGKLGPEACEMERQRFDGVIAMMERNDGPTLVVTDSQPLVPITTFSIAMAYQQNGGRLDPFVEGLEALETLQDGDRVLISEACNHNRITSACNDIGMVQIEFPELESGGMDGL------KLAIHCGGCMIDAQ--KMQQRMK---LHEAGVPVTNFFSWAAWPDALR. 302
10 -1.700PB005684 gi|160884252|ref|ZP_02065255.1| hypothetical protein BACOVA_02230 [Bacteroides ovatus ATCC 8483]gi|156109991|gb|EDO11736.1| hypothetical protein BACOVA_02230 [Bacteroides ovatus ATCC 8483]  ali follow..  12  108PSLQCFVVAPSASGKGILSYIRLLVEPIHDEIRKEVTIQMKAYKKEKAEYDAMGKERTKKEAPQMPPNRMFLISGNNTGT-DGTGLICEAEADTLSTAIGSDHGHWSDTLDRLSYNRRTDQEYREVKKSYLSV-SGTPSQVQTFIPTAEDGSYSR............................................ 277

FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 6 0 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Pio F, Pawlowski K, Godzik A. Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology. Bioinformatics. 2000 Dec;16(12):1105-10.