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Query: ACL93476.1, from C.crescentus

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MIAKPLTVVPGFDVWPGLLDISAQRALVEAVLAGAEQAPFSNYRTAYGKPMSVAMTALGSLGWTSDARGYRYVDRHPETGRPWPDMPPALLDLWTVLGDPETPPDSCLVNLYRDGARMGLHQDRDEADPRFPVLSISLGDTAVFRIGGVNRKDPTRSLRLASGDVCRLLGPARLAFHGVDRILPGSSSLVPGGGRINLTLRRARTALast
1 -4.800PB013946 A7ABR4_9PORP/121-442 PB013946; Pfam-B_13946;  ali follow..  15  241.............................................................................................................EYYNEGKTQG-I-----------VFGSG-ADTLILSARIGDEIIETVEVDLRTLEVVQCHGKHN----------QDTEYHERIIDLVNKNANLIRER 319
2 -4.760PB022815 A4DEQ0_LISMO/1-452 PB022815; Pfam-B_22815;  ali follow..  11  366.............................................................................................................DLLTEGKALS-H-----------VGGSNYGKTTIIFVRDKQDLEKSYTLEYKNGQIYQLRGKHN---CDPTKDVQMAANKWAK--LLKSKTKVLQN. 452
3 -4.230PB048420 Q64S71_BACFR/1-165 PB048420; Pfam-B_48420;  ali follow..  8  1.....................................................................................................MEIQFVIVR-SENAEYLCHNVNGTYVDVSDPSTEFVSGEDD-FRLVDPDSSLTRKEYEFRGERFYLMPQFYGNGWLAL-TLQSVEDETEYIVLSVNL........ 94
4 -3.790HGC00044 gi|162658718|dbj|BAAX01000887.1|1.0 TMP00920;  ali follow..  14  45............................................................LSYTTFTQEIQGQPEISVNIDSETGAPQAYATFNVKVTNTGKVPGKTSVQIYAPYTEGGLEKVAIQLLNFEKSSELAPGASASYDMEHDNGDGTTGTYVLDPGTYYFAAGNGAH................................ 172
5 -3.580PB033130 gi|160880323|ref|YP_001559291.1| transglutaminase domain protein [Clostridium phytofermentans ISDg]gi|160428989|gb|ABX42552.1| transglutaminase domain protein [Clostridium phytofermentans ISDg]  ali follow..  10  2..................................................................................................VCGAKVSLEILNYAEFASVTELYTDEKGC------VSITIGLGDIHIRAVKDGFFAEAMGHVRTQEEITLI..................................... 66
6 -3.310PB038151 Q8A4A5_BACTN/1-178 PB038151; Pfam-B_38151;  ali follow..  15  15........................................................................................................................HPDAKRTSISGLLISLLIGILSFSTFELEDKSSTVSMALMVFGTGLFLLGIFRLFWKSKEVVYVPT.................... 85
7 -3.220HGC01213 gi|163579070|dbj|BABE01006032.1|2.0 TMP01709;  ali follow..  8  112.........................................................................................................................ASDVTLQLSAASQSVPVGGSLDFTATIVHEGSGNYLVDGSDSVLTITSGQET-IYKSDVCPADSRLLLMAKGDKDVQKVT..... 192
8 -2.870PB064361 Q64PJ4_BACFR/1-580 PB064361; Pfam-B_64361;  ali follow..  11  22......................................................................NSEDMTDNPVETLSEGMYPLTFTAMQGEVVATPQTRVS-SKWDGGEVIGVKIGTDGAVGSYTLPTTSTSNIPAY----QSTASQTVYGWYPNTADISLTGQDNTGNKFPYVLKGVSSKQYSYKENVQLNLEHQLVK 168
9 -2.780PB001030 Q6D4H5_ERWCT/1-146 PB001030; Pfam-B_1030;  ali follow..  12  21.........................................................................................................GLMIALYHPETDASTQYNDLFSYAIKRLERCHFGEDKPA---QPARREAIKAIMRWSGPRMLLRHPILAIRHLIDDHRPVPDYPKRETSA........... 119
10 -2.740PB001823 Q5L7Q9_BACFN/1-326 PB001823; Pfam-B_1823;  ali follow..  10  117....................................................................................................DYDYNDLIIH-VKNTASNHAYQHPTETWQTIEIQPIALGSTKTIKLGCILSDGSTHMISDDVRTDLFGGRQG------FINTVNDNDPIRYKLASTNIKNYA.... 211
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 1 0 5   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;