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Query: ACL93477.1, from C.crescentus

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSKIIGIDLGTTNSCVAIMDGKTPKVIENAEGARTTPSVVAFLEDGERLIGQPAKRQAVTNPTNTLFAIKRLIGRTASDPVVEKDKGMVPYEIVKGPTGDAWVKAHGKDYSPQEVSAFILQKMKEAAEAHLGEPVTKAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKNDGKKIAVYDLGGGTFDVSILEIGDGVFEVKSTNGDTFLGGEDFDLRIVDYLADEFKKEQGVDLRKDKLALQRLREEAEKAKKELSSTAQYEVNLPFISMNASGPLHLNIKLSRAKLEALVDDLIARTIGPCEQALKDAGLKKSDIDEVILVGGMSRMPKVQQAVQDFFGREPHKGVNPDEVVALGAAVQAGVLQGDVKDVLLLDVTPLTLGIETLGGVFTPLIERNTTIPTKRSQTFSTADDNQSAVTIRVFQGERPMAQDNKMLGQFDLVGIPPAPRGVPQIEVTFDIDANGIVQVHAKDKATNKEHSIRIQANGGLSDSDIERMVKEAEANKAADEKKKQLVEAKNQGEAILHSTEKALAEHGDKVGAAEKTAIETGITELKTALEGEDVEAIQAKTQALIQASMKLGEAMYAAQQGSAEGGDAKADDGVVDAEFEEVDDNKPAALast
1 -7.470PB162065 _Gut.Meta.Jp.0089312_ gi|162832207|dbj|BABA01012502.1||1 (- 0:1326~0 complete)  ali follow..  11  2..................................................................................................................IGIFFQKTLKALETVCEGAEVGFITITMED-VDLATADALKRAAASMGIGAQLLLESHRLSYEYYALSQRREHDVGLFEYDRRGLRYHHLSVSWK-------------------------------------------------------------HHPPVVTAETTVLNQYLDGHELADPVPPEMDRQFLEAIKEV------------SARRMISTYYLMGGAESGKSWMNLSLKQLCAMKRHVFAGQNLYARGACYHSQGSFGRKPGFIAAGLLTKDIYLRSVHKQKLILAAAGTP---SAVSRKAIIIDGQEQLIIRM----RDPLTNFEQTVVMTLDALPQRPPKTTKLLIETSFQSETDCHIRVTDMGFGE............................................................................................................................................. 313
2 -3.740PB003142 Q8DVS6_STRMU/1-162 PB003142; Pfam-B_3142;  ali follow..  17  5...........................................................................................................................................VTFP-----------------PGRPLSNFLLEGTIMKLT-----------VYFD---GTFWFALVEHVNRKGQYKVFR----FGKEPKDSDIWNFIAKKLPSHADSIPQPKKMNPKRMQRVLNKSKKQSAVSTKAQAEMQKLHEALKKEKKSQSKEKRQALKQ......................................................................................................................................................................................................................................................................................................................................... 146
3 -3.030PB040621 Q8A865_BACTN/1-132 PB040621; Pfam-B_40621;  ali follow..  13  13.............................................................................................................................................................................VLTMCSAFSLKKGHSKTVYAFGAASFTDTVVYFTD-LDSAKVSKEGFLTHRDLYSYQLKNYVEDNGLQQNSTCMIYFSENRKKLEKEATKILSKYKRNRNTTVT.................................................................................................................................................................................................................................................................................................................................................................. 119
4 -2.650PB002589 gi|91201099|emb|CAJ74158.1| hypothetical protein [Candidatus Kuenenia stuttgartiensis]  ali follow..  15  1........................................................................................................................................................................IKEELVRCIKKNLRTDDGLRLEILSPGGPDFKHAEFFLEGGSVEIHVFASDWIHHKHENQDAVCLHVVMWNDLKGRCVKNFSGKVIERILQKAKKYEKWIENKPFERVLYEAIMES------LGYKNNKKPFLMLASLVTAETIQSFVPEYTPAQEKKIIA-QSLLLGMAGLLPLLTRESWSYTGIRPAN--FPDRRIVAIANILSEHLDNGLFRYILPGGKKLNKPQKLLGKERTSNIFVNVIIPVMLVYARKHNDKALEERLHYIYR--NYTPHPSTSVTKFMGTRI--GTSMVSNKVIHSARRQQGLYQL...................................................................................................................................................... 455
5 -2.240PB007733 A3U921_9FLAO/1-209 PB007733; Pfam-B_7733;  ali follow..  14  66...........................................................................................................KVWPYAKLASERLSELNARLASIKSKSERRKYTKIEEQFAAELKKLTRTEGQI----LVKLIHRQTGVT-TFQLIKNLRSRAFWYDTTAGLFDIEL-----------KSEYNPVNNRED---FLIEDILQRSFQRNILDNQPSVLNID........................................................................................................................................................................................................................................................................................................................................................................................ 201
6 -2.080HGC00711 gi|162743779|dbj|BAAZ01020484.1|1.0 TMP00907;  ali follow..  15  62....................................................................................................................................................GRSRAAADLAALGGATALSSIVAPGPCEAASRVARANGAEVTTCSVTGEDVVVEVVLGVSRPAVSSARAG............................................................................................................................................................................................................................................................................................................................................................................................................................. 137
7 -2.060HGC00044 gi|162658718|dbj|BAAX01000887.1|1.0 TMP00920;  ali follow..  14  14............................................................GVGNAASPVGAYASSTEWNYDNE----AYGF---------------GLSYTTFTQEIQGQPEISVNIDSETGAPQAYATFNV----------KVTNTGKVPGKTSVQILEKVAIQLLNFELAPGASEIVSVYDLDPGTYYFAA............................................................................................................................................................................................................................................................................................................................................................................................................................................ 167
8 -1.810PB083081 gi|160890648|ref|ZP_02071651.1| hypothetical protein BACUNI_03093 [Bacteroides uniformis ATCC 8492]gi|156859647|gb|EDO53078.1| hypothetical protein BACUNI_03093 [Bacteroides uniformis ATCC 8492]  ali follow..  15  12.........................................................................................................................................ALFMLTSCSMFEIDNYEEPSETIWG----EVVDEATGKRVLTDQGSEG--RVRLTELSDGTFQNT--KIFKGEYNVRIDG.............................................................................................................................................................................................................................................................................................................................................................................................................................. 99
9 -1.810PB001565 Q6LS01_PHOPR/1-384 PB001565; Pfam-B_1565;  ali follow..  13  4.....................................................................EHLLKKRWNKPVVNMVVLTKQFVL---STLVTNKRCHTTTYASHAITLNFEDTIMALFESY--DRRIDQITPVLEQYGFASFEEALEYCKERNVNPYDIVKE-LGAAIALKEDAKNAAEAAAFCIPGSVADQRQVGLGHGRLAARLLNNDTQAGHESY--AAAEGAIKIAMNANKVRHHPLRVILNGLGKDAAYMIARINGFNYVQTQFNYETGE--------DVVSERRFSTSQRGDIN-----ADDVREGVAIMHREEVDISITGNSTNPTRFQHPVAGTYKKERLEANQAYFSVASGGGTGRTLHPDNVA------AGPASYGMTDTMGRMDAQFAGSSSVPAHVEMMGLIGMGNNPMVGATV.................................................................................................................................................................................................... 375
10 -1.780PB155142 _HOMD.0127537_ bfor_c_1_1790 Tannerella forsythia ATCC 43037 [677748 - 680894] ORF  ali follow..  13  1.......................................................................................................................................................STQTSASVLNLIN-QTILKDAAATAL-YG-SRGANGVVLITTKSGRRGKTHIFTAEYGTSDFATPHALDYMDAGQY.................................................................................................................................................................................................................................................................................................................................................................................................................... 80

FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 6 0 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Pio F, Pawlowski K, Godzik A. Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology. Bioinformatics. 2000 Dec;16(12):1105-10.