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Query: ACL93479.1, from C.crescentus

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MNAHATPTPAHEIDPTGATPVMAQFFEMKARQPDALIFFRMGDFYELFFDDAYKAAAALGISQTFRGTHNGQPIPMAGVPQHAAEAYLSKLIRLGFKVAVCEQMEDPAEAKKRGSKAVVRRDIVRVVTPGTLTEDGLLDARGANRLAAVALRAGQAAVASVELSTGEVEVLAVAKEGVAPILAALAPSETLVADRLLSDDSLSQTLRICGGLVQPMPSALSEPQASETRVKRLYGVETLDGFGGLSPAEIGALGLIAAHLEMTQAGRLPALRAPRRAADADVMAIDPATRSSLEIDRTQSGDRNGSLLAAIDRTVTAGGARMLASRLARPLLDVAAIDQRLDAVEWFVEHRQLRQRLREVLKGAGDMARALSRLALGRGGPRDLGCIRDTLKVGERLAGMAGGAPDPLSPPPFELEHAFKALTPALHEGLSQFLTTLEHGLGPDLPALARDGGFVAAGVRPELDQARGLRDDSRKVIAALESQLALESGVPLKIRHNGVLGYFVEATAGKADPLFQPPLNATFIHRQTLANQVRFTTVELADLDARIAQAAERALAMEVAAFEDWREQARLLADAIQIASEALARIDVASSLAEWAEDAGAVRPVVDASYAFDAKAARHPVVEAAVKRAGEPYTPNDCRLDASGETAARLSIVTGPNMAGKSTFLRQNALLAILAQSGCYVPAASFRLGVVDRLFSRVGAGDDLARGRSTFMMEMVETASILTQAGPRSLVILDEIGRGTATYDGLAIAWACAEALHDTNRCRALFATHYHELATLETRMAFVSNLSLRAKEWNGDLVFLHEAAPGPADRSYGVQVAKLAGVPAPVVVRAREVLDRLESKDQSPAKLDDLPLFAVSQAVAVTSAPAKAAPSAVETSLADLDVDGMSPREALEALYRLKGLLTALast
1 -2.950HGC00024 gi|162813637|dbj|BABA01031072.1|2.0 TMP01508;  ali follow..  9  23...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................VTTGCSDLLEPPSAISDGSFWTGEGDAMLALTGCYRFQTGWSHDDFATPQGLLYLDFAGGNGTEKENFSTLMASSNTVATNSNLRWYWGNAYTQIAKY-----NTFLENITDCPMEESKKEQWS--------AEVKCLRAYFFLNLAFYYTD-VPMPLKTLSVDEANSISQTPQTEV----SQVEKDLKTAIDLLPVHYL------RGIWRLPG.................................................................................................................................................................. 215
2 -2.720PB007733 A3U921_9FLAO/1-209 PB007733; Pfam-B_7733;  ali follow..  11  23...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................MIIEGDTIPREFIDLEEVIILNKIKFTSDLERRRYLILRRKTRKVWPYAKLASERLSELNALASIKSKSERRKYTK-----IVQKYIEEQFAAELKKLTRTEGQILV----KLIHRQTGVTTFQLIKNLRSGWRAFWYDTTAGLFDIELKSEYNPVNNREDFLIEDILQRSFQRNILDNQPSVLNIDYFEASS....................................................................................................................................................................................... 207
3 -2.610HGC00789 gi|163310627|dbj|BABD01000073.1|7.0 TMP01036;  ali follow..  15  1..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................MAVSAPPILKTLKTKDMIA--TILQQIGG------------KRFTAMTGSRDIYDEGADLYNMRFYRRTF-TKDIAVHEGIYFDMLEEMFTMVTGLYTR.......................................................................................................................................................... 117
4 -2.530PB000119 Q6KIT1_MYCMO/1-381 PB000119; Pfam-B_119;  ali follow..  13  166.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................LVKILNKNLPNLWGEKFTFTFKEIKF--NFFSSIFLSFISIFALTITFAYNSTFLNLAQIVRINTI-NPNPNPNEIFNFDLNNLPIENGLLTVEAIWFLQSKMELT----DTATVIIINNTNINKNSVKHNNFAV--------NYLKSEENNWYLTGRDFPLLGLKDDV----EVFSPKIPALYFVVNNSTKN---IFSSVG--TFTFDGFS............................................................................................................................................................ 381
5 -2.320PB006791 A6TXD6_9CLOT/1-181 PB006791; Pfam-B_6791;  ali follow..  9  31.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................IIYNTTTSNLKDKYKRLVKGTDGKNIESVLMQHIEKVEEAQVEVEKVHKRLDIINNRMSFCIQKVGMVRYNAFADMGSDLSYSYALLDENNNGM----IITGIYGRSETVTYAKPVKDGKSNYSLSVEELQALQRAKENTIDTLELQGFRSKKE.................................................................................................................................................................................................................................................................... 180
6 -2.190PB010473 Q8A4J5_BACTN/121-234 PB010473; Pfam-B_10473;  ali follow..  10  2.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AFLLPLEAMEYEINKGAGNPL-----------EFKGLK-SQYLFIFAGGLVAVLLVVVILY---------IAGVNQWICIPFGLLSGSLLVWLTFR--LNARYGMKLLSGKRHPRYLIHRRRLFRLLTKRRK.............................................................. 114
7 -1.880PB021443 Q5LG43_BACFN/1-226 PB021443; Pfam-B_21443;  ali follow..  7  1........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................MKTMKFILACVLLLSPLLCQA-----QKNLFNKYNDMKGVSS--SKAMMELNYIGKVAEHLNSVQVLSTHDNKVREEMAKDIR---------------SLVQSSKYELLMKQKSTVSGSEVYVNRKGSKVKELIMV-------MNGASSLKFVYMEG-----TDDIKKLMLYQSTSQNFIISGDLFYANNKPVTYFKKGNSDNQKDMAELSGTYNLNSIDTNYKEELSTLNDKLKRID. 218
8 -1.820HGC00690 gi|162868815|dbj|BABB01001192.1|3.0 TMP00870;  ali follow..  10  1................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................MFEYILREIFLSVIAFLAGAGVSAGVFAFVLVIGVVPRILRCSRIENIILIECGVVAGNISSVLDTAYNLGFANMPKVPVSNICGNIIIAIYGLCVGIFVGCIAVALAEILHTFPIIYKR............................................................... 124
9 -1.780PB092941 Q45777_BACTN/1-139 PB092941; Pfam-B_92941;  ali follow..  9  7...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................KSEQITPFGG---CVMEEFDALLSNIIDSTLGPRTKTFGYQYCVYFCGGSCVEDISTHLMSHLSFHPVL----SCSADT----ILRAIKELTVPNITYTSSVSGKSYDFNMADRMNELLRQGTHIYRRIKRGT................................................................................................................................................................... 139
10 -1.760PB047496 gi|150008556|ref|YP_001303299.1| hypothetical protein BDI_1942 [Parabacteroides distasonis ATCC 8503]gi|149936980|gb|ABR43677.1| conserved hypothetical protein [Parabacteroides distasonis ATCC 8503]  ali follow..  8  48.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................VTFENLQGTWMYVNPALQLEGDNALKNVAGSLAATEAEKKMKEYCAKNYVFNSDSTFTSA---LKRGSLKGTYSVSPEDKTVTLRYTVG----NKKLTVSTLTAHVVLSGNELTLLFNADKLLKFLSTVSSISSNTTLKAINKL------ASEYDGMMLGF......................................................................................................................................................... 203
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 1 0 5   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;