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Query: ACL93481.1, from C.crescentus

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .
# Score Template Links and tools%idFirst MSKLTHIDDQGRARMVDVSEKPATAREAVAAGFVRMSAETLALAISGSGRKGDVRAVAELAGVMAAKKTSDLIPLCHPLALSKVEVAVEPADGGLSVTARVKTTGPTGVEMEALTAASVACLTIYDMLKAAEKGMVIEAVRLLEKTGGKSGDWKADQPLast
1 -4.050PB005346 A0R807_PELPD/1-258 PB005346; Pfam-B_5346;  ali follow..  11  11IKNQFHHNWMGMSQINQTTSGNFYSHRNITDQVLENFTDALDCLTA--------HLMLECSEVLAGVKPANLISIVNRTRPCGRNLYLLWQQHHTDLAQR-----LNNLNFMVLQSRQQSLLLLCYDHVRLEHHLSHPGIRTLLHKAG.......... 145
2 -3.480PB155142 _HOMD.0127537_ bfor_c_1_1790 Tannerella forsythia ATCC 43037 [677748 - 680894] ORF  ali follow..  16  6.....................................ASVLNLINPEDIESQTILKDAAATALYGSRGANGVV-----------------------ITTKSGRRGKTHIAFTAEYGTSFATPHALDYMDAGQ.......................... 79
3 -3.200PB177066 Q891G9_CLOTE/1-159 PB177066; Pfam-B_177066;  ali follow..  15  2....................................................TVLSLKEVKLLMNDTQKNDLFYVCC--------IEFIGRKTKNRRSIIVQKLGKKELIRQLDIAEANHCLSFEQVSDEIIEYFNIQE................... 81
4 -2.890HGC00962 gi|162759780|dbj|BAAZ01005693.1|3.0 TMP01305;  ali follow..  16  43.................................VWLSDDVWQEVLDNCPIRNEFAEKA-YCGRLHAERTGAYLP---RALQGVLEGTLGVFGERLG-----RLLLKLAVEHNMTNHLLGGDM---DMTRDEYSKMRGSSVREVSATHGT......... 154
5 -2.440HGC00947 gi|162844524|dbj|BABA01000185.1|4.0 TMP01280;  ali follow..  4  44..............................................KIDGETERVVNDTLDSLTITAFGTDSIILNNQKRVHGLSLPLRYTADSTVLVFHYSKDVKIKKDTPYFLSMDCGYQMKQSITGRSYSRHLLDSIYIQTAE............ 151
6 -2.380PB062605 Q9F6T7_BACTN/1-105 PB062605; Pfam-B_62605;  ali follow..  18  54................................................................................................................AVLALYTFGRAAYDIGRNDGSRMETGHAGRVE.............. 85
7 -2.280HGC00374 gi|162831834|dbj|BABA01012875.1|1.0 TMP00304;  ali follow..  14  119............................................................................................................LDYAELQAKGHIPMHMADWESKLGDFLRFNGREVLENFGTVK........ 160
8 -2.120HGC00762 gi|162641591|dbj|BAAX01018014.1|1.0 TMP00997;  ali follow..  11  9..QLKKLNNSSSLTKKNMTMEENTVHPARKLLLGQLIAYLLQAVAVVVGFESDLLEVGACAEDVFVKYQMLMLMEVLTICFIPMALKMSAVRRRLKADRVRGLVLFGSCRLAMIGVPLVANTILY................................. 134
9 -2.060PB027498 Q7MTK6_PORGI/1-146 PB027498; Pfam-B_27498;  ali follow..  11  59....................EKDSLLTAVSKSIVYYDDEELDRYAGVLPEEYNTEAVEEFEEILSTLQEEEVPSWIRSLQMRQIQMPISIKEQALFIVSEHRIQHR.................................................... 144
10 -2.000PB001232 gi|126647001|ref|ZP_01719511.1| hypothetical protein ALPR1_19713 [Algoriphagus sp. PR1]gi|126577049|gb|EAZ81297.1| hypothetical protein ALPR1_19713 [Algoriphagus sp. PR1]  ali follow..  11  29..TYEGTFFDQDVLVNKIKVTPRSRGERVFEGYIYIIEDLWA-IHSLNLKTSLLGFQIQATQQYAPVAENVWMPLTHTYRXXXXXXXXXXXXXYLASTRDYEVTMNPDLAYVPEIIDEKVQEVPDEVAEFDKSESALEQLAKEQPTT........... 172
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 1 0 5   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;