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current user: public |
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Query: ACL93481.1, from C.crescentus |
. 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . | |||||||
# | Score | Template | Links and tools | %id | First | MSKLTHIDDQGRARMVDVSEKPATAREAVAAGFVRMSAETLALAISGSGRKGDVRAVAELAGVMAAKKTSDLIPLCHPLALSKVEVAVEPADGGLSVTARVKTTGPTGVEMEALTAASVACLTIYDMLKAAEKGMVIEAVRLLEKTGGKSGDWKADQP | Last |
1 | -4.050 | PB005346 A0R807_PELPD/1-258 PB005346; Pfam-B_5346; | ali follow.. | 11 | 11 | IKNQFHHNWMGMSQINQTTSGNFYSHRNITDQVLENFTDALDCLTA--------HLMLECSEVLAGVKPANLISIVNRTRPCGRNLYLLWQQHHTDLAQR-----LNNLNFMVLQSRQQSLLLLCYDHVRLEHHLSHPGIRTLLHKAG.......... | 145 |
2 | -3.480 | PB155142 _HOMD.0127537_ bfor_c_1_1790 Tannerella forsythia ATCC 43037 [677748 - 680894] ORF | ali follow.. | 16 | 6 | .....................................ASVLNLINPEDIESQTILKDAAATALYGSRGANGVV-----------------------ITTKSGRRGKTHIAFTAEYGTSFATPHALDYMDAGQ.......................... | 79 |
3 | -3.200 | PB177066 Q891G9_CLOTE/1-159 PB177066; Pfam-B_177066; | ali follow.. | 15 | 2 | ....................................................TVLSLKEVKLLMNDTQKNDLFYVCC--------IEFIGRKTKNRRSIIVQKLGKKELIRQLDIAEANHCLSFEQVSDEIIEYFNIQE................... | 81 |
4 | -2.890 | HGC00962 gi|162759780|dbj|BAAZ01005693.1|3.0 TMP01305; | ali follow.. | 16 | 43 | .................................VWLSDDVWQEVLDNCPIRNEFAEKA-YCGRLHAERTGAYLP---RALQGVLEGTLGVFGERLG-----RLLLKLAVEHNMTNHLLGGDM---DMTRDEYSKMRGSSVREVSATHGT......... | 154 |
5 | -2.440 | HGC00947 gi|162844524|dbj|BABA01000185.1|4.0 TMP01280; | ali follow.. | 4 | 44 | ..............................................KIDGETERVVNDTLDSLTITAFGTDSIILNNQKRVHGLSLPLRYTADSTVLVFHYSKDVKIKKDTPYFLSMDCGYQMKQSITGRSYSRHLLDSIYIQTAE............ | 151 |
6 | -2.380 | PB062605 Q9F6T7_BACTN/1-105 PB062605; Pfam-B_62605; | ali follow.. | 18 | 54 | ................................................................................................................AVLALYTFGRAAYDIGRNDGSRMETGHAGRVE.............. | 85 |
7 | -2.280 | HGC00374 gi|162831834|dbj|BABA01012875.1|1.0 TMP00304; | ali follow.. | 14 | 119 | ............................................................................................................LDYAELQAKGHIPMHMADWESKLGDFLRFNGREVLENFGTVK........ | 160 |
8 | -2.120 | HGC00762 gi|162641591|dbj|BAAX01018014.1|1.0 TMP00997; | ali follow.. | 11 | 9 | ..QLKKLNNSSSLTKKNMTMEENTVHPARKLLLGQLIAYLLQAVAVVVGFESDLLEVGACAEDVFVKYQMLMLMEVLTICFIPMALKMSAVRRRLKADRVRGLVLFGSCRLAMIGVPLVANTILY................................. | 134 |
9 | -2.060 | PB027498 Q7MTK6_PORGI/1-146 PB027498; Pfam-B_27498; | ali follow.. | 11 | 59 | ....................EKDSLLTAVSKSIVYYDDEELDRYAGVLPEEYNTEAVEEFEEILSTLQEEEVPSWIRSLQMRQIQMPISIKEQALFIVSEHRIQHR.................................................... | 144 |
10 | -2.000 | PB001232 gi|126647001|ref|ZP_01719511.1| hypothetical protein ALPR1_19713 [Algoriphagus sp. PR1]gi|126577049|gb|EAZ81297.1| hypothetical protein ALPR1_19713 [Algoriphagus sp. PR1] | ali follow.. | 11 | 29 | ..TYEGTFFDQDVLVNKIKVTPRSRGERVFEGYIYIIEDLWA-IHSLNLKTSLLGFQIQATQQYAPVAENVWMPLTHTYRXXXXXXXXXXXXXYLASTRDYEVTMNPDLAYVPEIIDEKVQEVPDEVAEFDKSESALEQLAKEQPTT........... | 172 |
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9. Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018. Grynberg M, Godzik A. NERD: a DNA processing-related domain present in the anthrax virulence plasmid, pXO1. Trends Biochem Sci. 2004 Mar;29(3):106-10. |