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Query: ACL93480.1, from C.crescentus

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MPRRLRPTRLEHVVDGHALRARLSAAALDSIGNEAEQRARAIDILKQALFRGRMIAKERLENGASGVETSRLLSGVTDEVITALYDFTTVHVFRARNPTEGERLCLLAVGGYGRGTLAPFSDIDLLFLRPYKQTPHAESVIEYMLYALWDLGFKVGHASRTIEECVRLSKEDFTIRTSILEARRLTGDERLAEDLKKRFRDEVMKATGAQFVAAKLKERDDRQARAGASRYMVEPNVKEGKGGLRDLHTLMWIAEYLHPVDRPEDVFKMEVFSIRETKAFIRAFDFLHAVRAHLHFTTGRPEERLTFDLQPEIARRMGYGDRGDAPAVERFMRRYFLIAKEVGTLTRAFSAKLEAEHFKNEPKGISRFLPGARPKRKALDVEGFYEDGGRLNIEGQEIFEADPVNLIRLFKIADERDLDLHPDAFTAVTRALPLITSRVRRDPDACRAFLDLLARGKRSYRTLTLMNDAGVLGRFIPEFGRVVAQMQFNMYHSYTVDEHTLRAVGVIGDIAAGRLVDDHPLAVSIMPLIEDREALFLAMLLHDTGKGGVGGQEKAGARSARSACERLGVERSKVELVAWLVENHLVMSDFAQKRDVSDPGTVAAFARIVENPERLRLLLVITVADIRAVGPGVWNGWKGQLLRELYNATEAVFRGGRGSDAAANVQRHQESTAEAARAALLETDPAAKGWVAAMENAYFSAFSQDDLFHHAELARRAAIQGGAAAEGQVRPGSNAAEVVIAAKDRRGLFADLALAISSLGGNVVGARVFTSRQGQALDVFYVQDVTGAPFGCENPRALRRLADALEAAGKGDALAVEPRRGSEQTRAAAFAIAPSVTIDNDASNDATVVEASGRDRPGLLHALAKTLADSALSIQSAHIDGYGERAVDAFYVQTTEGGKVTDTRKLNALKADLLAALEQNEASAPAARPGLRRARASVARLast
1 -6.820sp|Q52LD8|RFTN2_HUMAN Raftlin-2 OS=Homo sapiens GN=RFTN2 PE=1 SV=3  ali   10  5............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................PQVE-----TKTEFAYEYVLLDFTLQASSNPEVIKINSILDIVTKVENYYLK-------YIVGAIHPVIQPVGQRKHLPASYLYRVVLLRLKLSPKNSAAPSGQRRPRLVIEECPLTSEAQTNDAAKELIEKINVAAKRGMKFV................................................................................................................................................................................................................................................................................................................................ 137
2 -5.960sp|O60813|PRA11_HUMAN PRAME family member 11 OS=Homo sapiens GN=PRAMEF11 PE=2 SV=3  ali   13  3.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AFSRRRCEALKLMVQRRLPLRPLIKMPCLEAFQAVLDGLDALLTQGVRPRRWKLQVLDLQDVCENFWMVWSEA............................................................................................................................................................................................................................................................................................................ 79
3 -5.290tr|Q6NXF4|Q6NXF4_HUMAN Sterol carrier protein 2 OS=Homo sapiens GN=SCP2 PE=2 SV=1  ali   15  4........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................VDLLINKYGLSAHPVAPQMFGYAGKEHMEKYGTKIEHFAKIGWKNHKHSVNNPYSQFQ---DEYSLDEVMASKEVFDFLTILQCCPTSDGAAA....................................................................................................................................................................................................................................................................................................................... 93
4 -5.020tr|B1AKM9|B1AKM9_HUMAN Phosphatidylserine decarboxylase (Fragment) OS=Homo sapiens GN=PISD PE=4 SV=1  ali   16  15....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAKWLHFPQLALRRRLGQLSCMSRPALKLRSWPLTVLYYLLPF---GALRPLSRVGWRPVSRVALYKSV................................................................................................................................................................................................................................................................................................... 80
5 -4.990sp|Q14699|RFTN1_HUMAN Raftlin OS=Homo sapiens GN=RFTN1 PE=1 SV=4  ali   14  9.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TKIDVSYEYRFLEFTTLSAAELPGSSAVRLASLRDLPAQLLELYQQGFSL---AALHPFVQPTHEREKTPLEHIFRAILIKKTDRSQKTDL-----GYILELDCCSSLDHPTDQKLIPEFIKKIQEAASQGLKFV................................................................................................................................................................................................................................................................................................................................ 138
6 -4.970sp|Q5TYX0|PRAM5_HUMAN PRAME family member 5 OS=Homo sapiens GN=PRAMEF5 PE=2 SV=1  ali   15  7...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................PRLLELAGLLRD---------QALAMSTLEELPTELAFSRRRCEALKLMVQARLPLRPLIKMPCLEAFQAVLDGLDALLTQGVHPRRWKLQVLDLQDVCENFWMVWSEAM........................................................................................................................................................................................................................................................................................................... 120
7 -4.970sp|Q5VXH4|PRAM6_HUMAN PRAME family member 6 OS=Homo sapiens GN=PRAMEF6 PE=2 SV=1  ali   15  7...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................PRLLELAGLLRD---------QALAMSTLEELPTELAFSRRRCEALKLMVQARLPLRPLIKMPCLEAFQAVLDGLDALLTQGVHPRRWKLQVLDLQDVCENFWMVWSEAM........................................................................................................................................................................................................................................................................................................... 120
8 -4.970sp|A6NMV5|PRA23_HUMAN PRAME family member 23 OS=Homo sapiens GN=PRAMEF23 PE=3 SV=1  ali   15  7...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................PRLLELAGLLRD---------QALAMSTLEELPTELAFSRRRCEALKLMVQARLPLRPLIKMPCLEAFQAVLDGLDALLTQGVHPRRWKLQVLDLQDVCENFWMVWSEAM........................................................................................................................................................................................................................................................................................................... 120
9 -4.900sp|Q6PGP7|TTC37_HUMAN Tetratricopeptide repeat protein 37 OS=Homo sapiens GN=TTC37 PE=1 SV=1  ali   19  16.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................SLVQEATTEALKLCFCPLAVLLQAL-------KRKMGARETRRLLERVVYQPGYPKSIASTARWYL-LRHLYAKDDYELIDVLVNNAKTHGDTRALELNQRLS.............................................................................................................................................................................................................................................................................................................................. 113
10 -4.880sp|Q63HN8|RN213_HUMAN RING finger protein 213 OS=Homo sapiens GN=RNF213 PE=1 SV=2  ali   12  1...................................................................................................................EDSPKMPLKTLLLEDGCIEDDPAPHKKVGFVGISNWALDPAKMNRGITELIESAKGICSSDILVQDQGYFASFAKAYETVCKRQDKEFFGLRDYYSLIKMVFAAAKASNRKPSPQDIAQ--VLRNFSGKDDIQALDIFLANLPEAKCSEEVSPMQLIKQNIFGPSQKVPG--AESRYLLVLTKNYVALQILQQTQPEIIFGSGFPKDQEYTQLCRNINRVKICMETLQNLYESLYDALNQYYVHLGGQKYVDL-GLGTHRVKCRVHPNFRLI---VIEEKDVVYKHFPIPLINRL---EKHYLDINTVLEKWQKSIVEELCAWVEKSDACASVVLQVIERQGPRALLLNCATPDAVVRLSAYSLGGFAAEWLSQEY--FHRQRH-----NSFADFLQAHLHTADLERHAIFTEITTFSRLLTSHDCEILESEVTGRAPKPTLLWLQQFDTEYSFLKNTAKCKILIFQTDFEDGIRSAQLIASAKYSVINEINKIRENEDRIFVYFITKLSRVGRGTAY-GLWQSVHIDDLRRSTLMVSD.............................................................................................................................................................................................................................................................................................. 605
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Jaroszewski L, Godzik A. Tolerating some redundancy significantly speeds up clustering of large protein databases. Bioinformatics. 2002 Jan;18(1):77-82.