current user: public

If you have questions about the server, please let us know.

Query: ACL93482.1, from C.crescentus

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180
# Score Template Links and tools%idFirst MSEALKPGGGIKPDLPFTPVRVAVLTITDTRDEASDTSGQILVERIKAAGHELGGRVVVRDDIEQIRAQVRSWIDSKTVDAIVTTGGTGLTGRDVTVEALEPLFDKKIDGFSVVFHLVSYASVGLSTLQSRATAGLIESVFVFCLPGSNGAVKDGWDKVIAAQLDSRHKPCNMVELMPRLLERLast
1 -4.460sp|Q6P2S7|GNN_HUMAN Tetratricopeptide repeat protein GNN OS=Homo sapiens GN=GNN PE=2 SV=3  ali   69.........................................................VISKESDRTFEILEKFALKDV-ELDFNNVAADSSLDSVPRFFRINPTPTY............................................................................ 117
2 -4.370tr|E7EWK8|E7EWK8_HUMAN Uncharacterized protein OS=Homo sapiens GN=PLOD1 PE=4 SV=2  ali   1............KGDAKPEDNLLVLTVATK----ETEGFRRFKRSAQFFNYKIQALGL--QKVRLLKKALEKHADKED-LVILFADS------DVLFASGPRELLKKFRQARSQV.................................................................... 106
3 -4.120sp|Q86UW7|CAPS2_HUMAN Calcium-dependent secretion activator 2 OS=Homo sapiens GN=CADPS2 PE=1 SV=2  ali   16  10......................................................ETQIVADEANAVRSYYEVFLKSDRVARMVQSGGCSAND---FREVFKKNIEKRVRSLPEI..................................................................... 68
4 -3.940sp|A4D0V7|CG058_HUMAN Uncharacterized protein C7orf58 OS=Homo sapiens GN=C7orf58 PE=2 SV=1  ali   4.........................................................FLLSGNAQETRKVKESMETSHGRRAILYRPPFYSKTEL------QLHQHILTQHGYTVVIAEERLNAGLGPGLLEQGDLGSWDLLICLSSKKAEGTPCISKEVMCQLGLHQKAN............ 114
5 -3.930sp|Q9H091|ZMY15_HUMAN Zinc finger MYND domain-containing protein 15 OS=Homo sapiens GN=ZMYND15 PE=2 SV=1  ali   14  1................................................................KVSARPYHLFQGPKPDLVIG--NSGFALKDTWLRSLPRLQSLRVPAFFTESSEYSCV.............................................................. 56
6 -3.900tr|Q5JXB7|Q5JXB7_HUMAN Procollagen-lysine 1, 2-oxoglutarate 5-dioxygenase 1 (Fragment) OS=Homo sapiens GN=PLOD1 PE=2 SV=1  ali   1............KGDAKPEDNLLVLTVATKEGLGEDWNVELLKKALEKHADKEDLVILFADSYDVLPRELLKKFRQARSQVVFSASGGFIGYAPNLSKLVAEWEGQDSDSDQLFYTKIFLDP............................................................. 172
7 -3.600sp|Q9H467|CUED2_HUMAN CUE domain-containing protein 2 OS=Homo sapiens GN=CUEDC2 PE=1 SV=1  ali   15  3.........................................LERIVSAALLAFVQTHLPEADLSGLDEVIFSYV----LGVLEDLGPSGPSEENFDMEAFTEMMEAYVPGFAHI..................................................................... 71
8 -3.590sp|Q8N187|AL2S8_HUMAN Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 8 protein OS=Homo sapiens GN=ALS2CR8 PE=2 SV=2  ali   16  45.........................TLSAEQFHLVDQNGQAIQYELQSLGESNAQMMIVASPTEN---RVIPPTQTGMAQVIIPQG................................................................................................. 106
9 -3.530sp|Q5TCS8|AKD1_HUMAN Adenylate kinase domain-containing protein 1 OS=Homo sapiens GN=AKD1 PE=1 SV=2  ali   13  31.............................................................EMEPFKEKIGSFIILKQLEATISEAYIKILNLEIADRTPQELLQKVVETMEKPFQYTAWE.............................................................. 91
10 -3.500sp|A6NGR9|CH073_HUMAN Putative uncharacterized protein C8orf73 OS=Homo sapiens GN=C8orf73 PE=2 SV=2  ali   13  7...................ALYTAACLEEAGFAGTQATVLTLSSALEARGERLEDQ--VHALVRGLLAQVPSLAEGRPWRAALRV--LSALALEHARDVVCALLPRSLPVAAELWRSLSRNQRVNGQVLVQALAATRALGEMLAVSGCVGATRGFYPHLLLALVTQLHKLAR........... 172

FFAS is supported by the NIH grant R01-GM087218-01
1 3 7 5 6 4   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Robinson-Rechavi M, Godzik A. Structural Genomics of Thermotoga maritima Proteins Shows that Contact Order Is a Major Determinant of Protein Thermostability. Structure (Camb). 2005 Jun;13(6):857-60.