current user: public
If you have questions about the server, please let us know.

Query: ACL93474.1, from C.crescentus

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .
# Score Template Links and tools%idFirst MKVRPMANNPGAKKAIRKIARRTEVNTARRSRVRTFLRKFEDAIAKGDVAVAKAAFVEAQSELMRAVSKGVVHPNTGSRKVSRLAARLKKLDKAAALast
1 -52.7001fjg_T mol:protein length:106 30S RIBOSOMAL PROTEIN S20  ali model follow..  26  1MAQKKPKRNLSALKRHRQSLKRRLRNKAKKSAIKTLSKKAVQLAQEGKAEEALKIMRKAESLIDKAAKGSTLHKNAAARRKSRLMRKVRQLLEAAG 96
2 -51.1006ha1_t mol:protein length:88 30S ribosomal protein S20  ali model follow..  32  1.....MPNIKSAIKRTKTNNERRVHNATIKSAMRTAIKQVEASVANNEADKAKTALTEAAKRIDKAVKTGLVHKNTAARYKSRLAKKVNGLSA... 88
3 -51.0003j9y_t mol:protein length:87 30S ribosomal protein S20  ali model follow..  39  1.....MANIKSAKKRAIQSEKARKHNASRRSMMRTFIKKVYAAIEAGDKAAAQKAFNEMQPIVDRQAAKGLIHKNKAARHKANLTAQINKLA.... 87
4 -50.9005v93_t mol:protein length:86 30S ribosomal protein S20  ali model follow..  37  1.....VANIKSQQKRNRTNERARLRNKAVKSSLRTAVRAFREAAHAGDKAKAAELLASTNRKLDKAASKGVIHKNQAANKKSALAQALNKL..... 86
5 -50.8005o5j_T mol:protein length:86 30S ribosomal protein S20  ali model follow..  39  1.....MANIKSQIKRIRTNERRRLRNQSVKSSLRTAIRGFREAVDAGDKDKASELLHATSRKLDKAASKGVIHPNQAANKKSALALALNKL..... 86
6 -48.4004jv5_T mol:protein length:99 30S ribosomal protein 20  ali model follow..  26  1.......RNLSALKRHRQSLKRRLRNKAKKSAIKTLSKKAIQLAQEGKAEEALKIMRKAESLIDKAAKGSTLHKNAAARRKSRLMRKVRQLLEAAG 89
7 -45.9005uq7_t mol:protein length:98 30S ribosomal protein S20  ali model follow..  26  3.......RNLSALKRHRQSLKRRLRNKAKKSAIKTLSKKAIQLAQEGKAEEALKIMRKAESLIDKAAKGSTLHKNAAARRKSRLMRKVRQLLEAAG 91
8 -45.6005nd8_t mol:protein length:83 30S ribosomal protein S20  ali model follow..  21  1.....MANIKSAIKRVKTTEKAEARNISQKSAMRTAVKNAKTAV-SNNADNKNELVSLAVKLVDKAAQSNLIHSNKADRIKSQLMTANK....... 83
9 -39.8005mmj_t mol:protein length:183 plastid ribosomal protein bS20c  ali model follow..  31  69.EVATLKKADSAAKRTRQAETRRLRNKARKSEVKTRMRKVFEALDALKKKSGDNLIAEAYSAIDKAVVKGTLHRNTAARRKSRLARNKKVVEIHHG 172
10 -7.6302oo2_A mol:protein length:86 Hypothetical protein AF_1782  ali model follow..  15  3LEEELRRETLKWLERIEERVKEIEGDEGFMRNIEAYISDSRYFLEKGDLVRAFECVVWAWAWLEIGLEVGKLH....................... 75
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 4 5 9   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Li W, Godzik A. In search for more accurate alignments in the twilight zone. Protein Sci. 2002 Jul;11(7):1702-13.