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Query: ACL93480.1, from C.crescentus

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MPRRLRPTRLEHVVDGHALRARLSAAALDSIGNEAEQRARAIDILKQALFRGRMIAKERLENGASGVETSRLLSGVTDEVITALYDFTTVHVFRARNPTEGERLCLLAVGGYGRGTLAPFSDIDLLFLRPYKQTPHAESVIEYMLYALWDLGFKVGHASRTIEECVRLSKEDFTIRTSILEARRLTGDERLAEDLKKRFRDEVMKATGAQFVAAKLKERDDRQARAGASRYMVEPNVKEGKGGLRDLHTLMWIAEYLHPVDRPEDVFKMEVFSIRETKAFIRAFDFLHAVRAHLHFTTGRPEERLTFDLQPEIARRMGYGDRGDAPAVERFMRRYFLIAKEVGTLTRAFSAKLEAEHFKNEPKGISRFLPGARPKRKALDVEGFYEDGGRLNIEGQEIFEADPVNLIRLFKIADERDLDLHPDAFTAVTRALPLITSRVRRDPDACRAFLDLLARGKRSYRTLTLMNDAGVLGRFIPEFGRVVAQMQFNMYHSYTVDEHTLRAVGVIGDIAAGRLVDDHPLAVSIMPLIEDREALFLAMLLHDTGKGGVGGQEKAGARSARSACERLGVERSKVELVAWLVENHLVMSDFAQKRDVSDPGTVAAFARIVENPERLRLLLVITVADIRAVGPGVWNGWKGQLLRELYNATEAVFRGGRGSDAAANVQRHQESTAEAARAALLETDPAAKGWVAAMENAYFSAFSQDDLFHHAELARRAAIQGGAAAEGQVRPGSNAAEVVIAAKDRRGLFADLALAISSLGGNVVGARVFTSRQGQALDVFYVQDVTGAPFGCENPRALRRLADALEAAGKGDALAVEPRRGSEQTRAAAFAIAPSVTIDNDASNDATVVEASGRDRPGLLHALAKTLADSALSIQSAHIDGYGERAVDAFYVQTTEGGKVTDTRKLNALKADLLAALEQNEASAPAARPGLRRARASVARLast
1 -31.1003wfo_A mol:protein length:525 Poly A polymerase  ali model follow..  20  32....................................................................................................PREHYCFIVGGWVRDRIGYNIDVDFLT-------TADPVELAKNFAKRIGGHFFVFEKRGFLIKRPTIASVVLHLPPYRYRFDFSPLKGK---DLEKALIEDLKERDFT--ANAIAVNLDDVLSIGAKQTIVYDP------GGIKDLE-------------------------------------------------------------------------------------------------------------------------------------------QGLLRPVSIENLKRDPVRVLRGFRIAIEKNLQLTEDFYEFVKEDPRIVLK---AVERITHELFKIMKEK-TAHKVIRELYEYGVLEAIIPEIGRLREVKDQGEHHIYPLDEHTLKTLEYLEQVIEDAELLENFGKKRVLGEFTDVELLKWGALFHDIGKPQ--EHDKVGAQIVREIGERLRWGDEATEFVAKLVRHHLRPFFLREKKGELKRRGMANFWRECG--DIAPHLFLLSIADAMASGDE.................................................................................................................................................................................................................................................................................................................... 425
2 -25.2001v4a_A mol:protein length:440 Glutamate-ammonia-ligase adenylyltransferase  ali model follow..  15  47...IAHPEWLTELESQPPQADEWQHAWLQEALCNVSDEAGLMRELRLFRRRIMVRIAWAQTLALTEESILQQLSYLAETLIVAARDWLYDACCRENAQGEAQPLLILGMGKLGGGELNFSSDIDLIFAWPEHGCTQFTRMGQRLIKVL-DMRLR-GPLVLSFAALEDYYQEQGRDRYAMVKARIMGDSEGVYANELRAMLRPFVFRRYIDFSVIQSLRNMKGMIAREVRRRGLTDNIKLGAGGIREIEFIVQVFQLIRGLPTLSAIAELHLLSENDAEQLRVAYLFLRRLENLLQSINDEQTQTLPSDNRARLAWAMDFAD------WPQLTGALTAHMTNVRRVFNELIGD............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 438
3 -24.3003k7d_A mol:protein length:498 Glutamate-ammonia-ligase adenylyltransferase  ali model follow..  16  122...ARYPLLLDELLDPNTLYQPTATDAYRDELRQEDDEEQQLEALRQFKQAQLLRIAAADIAGTPVMKVSDHLTWLAEAMIDAVVQQAWVQMVARLNEREGRGFAVVGYGKLGGWELGYSSDLDLIFLHDCPMDAMTDRLAQRIMHLF-DARLR-GMLVTSAEAFADYQKNEAWTHQALVRARVVYGDPQLTAHFDAVRREIMTLPREGKTLQTEVREMREKMRAHLGNKHRDRFDIKADEGGITDIEFITQYLVLRYAVRILELLAQNDIMEEQEAMALTRAYTTLRDELHHLALQELPGHVS---TAERELVRASWQK............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 493
4 -18.8001u8s_A mol:protein length:192 glycine cleavage system transcriptional repressor, putative  ali model follow..  11  2..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................SLTQHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLML------------------------ISGSPSNITRVETTLPLLGQQHDLITMMKRTSPHDHQTHAYTVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQ-----RVDSGCNLMQLQEEFDALCTA..................... 168
5 -17.7004n6w_A mol:protein length:228 Predicted HD phosphohydrolase PhnZ  ali model follow..  14  1...............................................................................................................................................................................................................................................................................................................................................................................................................................................MRGSMASMTGGQQMGRDLYDDDDKDRWGSELEMSLSNSSKVSVLISLLEKSRDLDYIG--EAINQLEHSLQCA-------------------YFAQRSGADNEMVLAALLHDLGH---WQHEKVGA----DYLRGLGFSER----VACLIEGHVAAKRYLVSSKASYLKNLSD-RRLFEEREDFKDCLKIRAWDEKGKQTDL----KVPGPEHYRKMMEEHLSENQN.......................................................................................................................................................................................................................................................................................... 222
6 -17.7004n71_A mol:protein length:198 Predicted HD phosphohydrolase PhnZ  ali model follow..  17  2................................................................................................................................................................................................................................................................................................................................................................................................................................................................................SLSNSSKVSVLISLLEKSRDLDYIG--EAINQLEHSLQC-------------------AYFAQRSGADNEMVLAALLHDLGHYGVWQHEKVGA----DYLRGLGFSER----VACLIEGHVAAKRYLVSSKASYLKNLSD-RRLFEEREDFKDCLKIRAWDEKGKQTDL----KVPGPEHYRKMMEEHLSENQN.......................................................................................................................................................................................................................................................................................... 190
7 -17.3005dqv_A mol:protein length:211 Uncharacterized protein  ali model follow..  11  7.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................MTELKQADQIRTWVQSV--LTGESSGHDW---LHISRVADLAVYIGEKENA--------------DLFIVETAALVHDLIDVKLPDTIRLSVSEVYNQLVTFGIGKEDADRVIHIITKM---SFRDREKLEGEPLSIE--GKVVQDADRLDAIGAVGIARAFMFAGAKGHGLYGDDQSAYAHFFHKLLRLIDMMNTDTARELAEERHEFMLQYIRQLEKD............................................................................................................................................................................................................................................................... 202
8 -17.1003b57_A mol:protein length:209 Lin1889 protein  ali model follow..  9  1.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................MNKEEIILSAKNWMHSH--FENETTGHDW---SHIKRVWKLSKEIQSKEGGD--------------LFTIELAALFHDYSDIKLTTDEQEATKTLINWMETKEIPSELIKKIIRIIQSV---SFKKGKNTFKALTIEEKIVQDADRLDAIGAIGIARTFTYGGAHNREIANQNNPKNTTLQHFYDKLLLIKDQLNTETAKTIAKEKQKIMQDFIQALEKE............................................................................................................................................................................................................................................................... 198
9 -16.5003nku_A mol:protein length:213 DrrA  ali model follow..  8  3...................MMSVNEEQFGSLYSDERDKPLLSPTAQKKFEEYQNKLANLSKIIRENEGNEVSPWQEWENGLRQIYKEMIYDAFDALGVEMPKDMEVHFAGSLAKAQATEYSDLDAFVIVKNDEDKPVFDALNNLCQRIFTASIYPDPIGINPSRLIGMVADVEATAMSILTSKPVLPRYELGEELRDKIKQE.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 203
10 -16.2002nyi_A mol:protein length:195 unknown protein  ali model follow..  15  1..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................SETQSFVVSVAGSDRVGIVHDFSWALKNISANVESSRMACLGGDFAM-IVLVSLNAKD---------GKLIQSALESALPGFQISTRRASSVAERH-------------VSPDTREYELYVEGPDSEGIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRMGSRVAF-PFPLYQEVVTALSRVEEE..................... 165
11 -16.2003djb_A mol:protein length:223 Hydrolase, HD family  ali model follow..  15  1.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................MTKQEKIEKTITFVKHI--LEKDASGHDW---YHIRRVHKMAISLSEQEGGN--------------RFIIEMAALLHDVADEKLNESEEAGMKKVSDWLEELHVEEEESKHVLHIIANMSYKGGHGGK-----VESIE--GKLVQDADRLDALGAIGIARTFAYGGAKGRLMYDPTIPPREVMTKDEYRKNNDPSLNHFYEKLLKLKDLMNTNAAKQEAEVRHRYMEQFIEQFMKEWNAQIL......................................................................................................................................................................................................................................... 216
12 -16.1003dto_A mol:protein length:223 BH2835 protein  ali model follow..  15  1.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................MNEQAILQSAEAWVKKQ--LMDEYSGHDW---YHIRRVTLMAKAIGEQEKVD--------------VFVVQIAALFHDLIDDKLVDDPETAKQQLIDWMEAAGVPSQKIDHTMDIINTISFKGGHGQSLATREAMVVQ-------DADRLDALGAIGIARTFAYSGNKGQPIYDPELPIRETMTVEEYRHGKSTAINHFYEKLFKLKDLMNTETGKQLAKERHVFMEQFIERFLSEWNGDML......................................................................................................................................................................................................................................... 216
13 -15.3002qgs_A mol:protein length:225 Protein SE1688  ali model follow..  17  1.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................MNSRMKIKKAYEYMKSF--HQHDTTGHDI---AHVERVYNNACYIAKRE-------------NITDTLVIELSSLLHDTVDSK--TDEILAYDQLKQFLSTLDLSSEISQQVLYIIKHM------SYRAGKNNHVKLSIDGEIVRDADRLDAIGAIGIARTFQFS...................................................................................................................................................................................................................................................................................................................... 140
14 -15.1003aql_A mol:protein length:415 Poly(A) polymerase  ali model follow..  15  13...............................................................................................................................................................................................................SRKDISENALKVMYRLNKAGYEAWLV--------GGVRDLLL--------------KKPKDFDVTTNATPEQVRKLFRNCRLV--------GRRFRLAHVMFGPEIIEVATFRGHHEGNVSDR------QRGQNGMLLRDNIFGSIEEDAQRRDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNTRYREDPVRMLRAVRFAAKLGMRISPETAEPIPRLATLLND---PPAHLFEESLKLLQA-GYGYETYKLLCEYHLFQPLFPTITRYFTENGDSPMERI---EQVLKNTDTRIHNDMR----------------VNPAFLFAAMFWYPLLETYHDAFALAMNDVLDEACRSLAIPKRLTTLTRDIWQLQLRMSRRQGKR-------AWKLLEHPKFRAAYDLLALRAEVERNAELQRLVKWWQKGMLNEL....................................................................................................................................................................................................................................................................................................... 414
15 -15.0003s4l_A mol:protein length:244 CAS3 Metal dependent phosphohydrolase  ali model follow..  14  3.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................LGEIMEVLAFKNQSLIDHVNDMVKYWERIKYRYLKTIKRALEALNIKLDIEEFMKILIKLHDIGKASKIRHELVSAYYTYHILLKKFGDKNLAFIGALTVLHHEPIIMGQIRNLKKKELTAEVVLDKLKKFDGM-LLLPLVMCDYKGAE...................................................................................................................................................................................................................................................................................................................... 224
16 -14.6002pq7_A mol:protein length:220 Predicted HD superfamily hydrolase  ali model follow..  15  3............................................................................................................................................................................................................................................................................................................................................................................................................................................................................NLTELMERIPHLRE-ILNIVREAFKDYDDPAHDI---SHTFRVMENASEIASREK---------------DLQKAIIAALLHDIKRPHGVDHAESGAEYASGLLPTMGFDISFVAEVSKAIRSH------------GGLTPTSLTGKILQDADRLDAIGAVAIARVFSYSGKTGTPLHSLQFSPRSSYSGNSRSSINHFHEKILKIRPETFWTETARKMAEDRYSFVVEFVQRFLAEW.................................................................................................................................................................................................................................................. 217
17 -12.7004wby_A mol:protein length:410 Poly A polymerase  ali model follow..  14  9...................................................................................................................................................................................................................IEEIAREVGQIAKEMGLRAYIV--------GGVRDI-LLGKEVWDVDFVVEGNAIELAKELARRHGVNVHPFPEFFATARRETYPRPGAYPKVEPASLKEDLIR-----------------RDFTINAMAISVNLEDYGTLID------------------------YFGGLRDLKDKVIRVLHPVSFIEDPVRILRALRFAGRLNFKLSRSTEKLLKQAVNLGLLKEAPRGRLINEIKLALRED-RFLEILELYRKYRVLEEIIEGFQWNEKVLQKLYALRKVVDWHALEFSE----------------------ERIDYGWLYLLILISNLDY-----------ERGKHFLEEMSAPSWVRETYKFMKFKLGSLKEELKKA---HTSVLLLLMLEEELKEKIKLYLKEKIEELKKQG-------KGKELGERIEELKREIMNKIKLAAALE.................................................................................................................................................................................................................................................................................... 404
18 -12.6002pjq_A mol:protein length:231 Uncharacterized protein lp_2664  ali model follow..  12  6.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................MITETQLTAIQTYALQK--LAHDHSGHGR---DHLQRVNRLARRLAKDEGA--------------NLNLTLAAAWLHDVIDDKLMANPAKAHQDLIVQLNAQNVTADDQTAIFAIIDH------MSFSKSFNGPQKLSLEGQVVQDADRLDAIGAIGIARALYYS...................................................................................................................................................................................................................................................................................................................... 145
19 -12.4003sk9_A mol:protein length:265 Putative uncharacterized protein TTHB187  ali model follow..  13  18.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................HPLLAHMLDTAAVALAVLRMEPPRTRALYAEDWGLPEELAWAAALVGLHDLGKASPVAHGVFTELFLRRLLKEKGLPERAANDLAAALGAH--ARRHLRTEDPLWKEARRWLLEEVFRRPEAVLRVLASFADWVASDPSLFPYGRDPRRGDYLKEALRLAQEA............................................................................................................................................................................................................................................................................................ 235
20 -12.0003gw7_A mol:protein length:239 Uncharacterized protein yedJ  ali model follow..  14  1.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................MDLQHWQAQFENWLKNH--HQHQDAAHDV---CHFRRVWATAQKLAADDDV--------------DMLVILTACYFHDIVHPQRQRSSILAAEETRRLLREEQFPAEKIEAVCHAIAAH---------SFSAQIAPLTTEAKIVQDADRLEALGAIGLARVFAVSGALGVALFDGEDPFAQHRPLDDKRYALDHFQTKLLKLPQTMQTARGKQLAQHNAHFLVEFMAKLSAEL.................................................................................................................................................................................................................................................. 212
21 -11.9005zz8_t mol:protein length:3122 UL36  ali model follow..  13  764..........PPALGPEAIQARLEDVRIQAR-------RAIESAIKEYFHRGAVYSAKALQASDSASAAVVPMVQLLESL--PAFDQHTRDVAQRAALPPPPPLATSPQAILLRDLLQRGQTLDLSVLTDAATQGLIERKLEELARSIHGINDQQARRSSGLAELQRFDALDAALAQQL-DAAFVPGLSPEATRMAEDALRQARAMEAAKMTAELAPEARSRLRERAHALEAMLNDARERAKVAHDAREKFLLQGVLRPLPDFVGLKACPAVLATLRASLPAG-EVTAALRADLWGLLGQYREALEHPTPDTATALAGLHP-----AFVVVLKTLFADAPETPVLVQFFSDHAPTIAKAVSNAINAGSAAVATASPAATVDAAVRAHGALADVSALGAAARDPASPLSFLAALADSAAGYVKATRLALEAR-----------------------------GAIDELTTLGSAAALVVQARRACAQPEGD--HAALIDAAARATTAARESLAGHEAG--------------------FGGLLH--AEGTAGDHSPSGRAL-QELGKVIGATRRRADELEAAVADLTAKMAAQRARGSSEAAGVEAALDRVENRAEFDVVELRRLQALAGTNPYTPENQRHPMLPPLFHAAAETIAEGLLEMAQAGDGFIDYHEAVGRLADDMTSVPGLRRYVPFFQHGY-IRADVHRALGGVPLDLAAAAEQISAARNDPEATAELVRVTLPCPSEDALVACAAALERVDQSPVKNTAAFVTRQDTA-ETKDAVVRAKQQRAEATERVMAGLREALAAR-ERRAQIEAEGLANLKTMLKVVAVPATVAKTLDQARSVAEI----ADQVEVLLDQTEKTRELDVPAVI-------EHAQRTFETHPLSAARGDGPGPLARHAGRL-GALFDTRRRVDALRRSLEEAEA.... 1734
22 -11.7003h37_A mol:protein length:441 TRNA nucleotidyl transferase-related protein  ali model follow..  11  6...........................................................................................................................DVSKLLVERVDPKILNLFRLLGKFGDEVNMPVGGFVRDL--LLGIKNLDIDIVVE--------GNALEFAEY----------------AKRFLPGKLVKHDKFMTASLFLKGGLR------------------------------------------------IATARLEYYESPAKLPDVEMSTIKKDLYR-----------------RDFTINAMAIKLNPKDFGLLID------------------------FFGGYRDLKEGVIRVLHTLSFVDDPTRILRAIRFEQRFDFRIEETTERLLKQAVEEGYLERTTGPRLRQELEKILEEK-NPLKSIRRMAQFDVIKHLFPKTYYTPSMDE-KMENLFRNIPWVEENFGEVDR---------------------------FYAVLHVF-------LEFYDDESWKEVRDRYSLRRNLINEIRHVEKSAPALLEMLSER---PASFVYPLVKGVSNETICHFLAYINGEYLIRKG-------SGKIIGEVLEKILMKKLDGDTRDEEEILEEVLASLETEGKLAAALE................................................................................................................................................................................................................................................................. 435
23 -11.6002f06_A mol:protein length:144 conserved hypothetical protein  ali model follow..  15  8................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................QLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGIL----------RGIVSDPDKAYKALKDN-----------------------------------HFAVNITDVVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRPSNMD-------KCIEVLKEKKVDLLAASD................... 140
24 -11.3004ebj_A mol:protein length:272 Aminoglycoside nucleotidyltransferase  ali model follow..  13  1.....................................................................MGSSSSGRENLYFQGVQHTIARWVDRLREEYADAVAILLKGSYARGDAATWSDIDFDVLVSTQDVEDYRTWIEPVGDRLVHISAAV-EWVTGWERDTVDPSSWSYGLPTQETTRLMWAINDETRRRLDR-------------PYKTHPAAEPEVEDTVEALGKIRNAIARG----DDLGVYQSAQTVAKLVPTLLIPINPPVTVSHARQAIEAILAF----------------PRVPVGFAADWLTCLGLVEERSARSTAAAAERMVRGVLEM...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 239
25 -11.1002ko1_A mol:protein length:88 GTP pyrophosphokinase  ali model follow..  15  6..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMI------FVKNTDKLTTLMDKLRKV........................ 69
26 -11.0001kan_A mol:protein length:253 KANAMYCIN NUCLEOTIDYLTRANSFERASE  ali model follow..  10  10......................................................................EERMKIVHEIKERILDKYGDDV-----------KAIGVYGSLGRQTDGPYSDIEMMCVMSTEEAEFSHEWTTG--------EWKVEVNFYSEEILLDYASQVESTHGQFFSILPIYDSGGYLEKVYQTAKSVEAQKFHDAICALIVEELFEYAGKWRNIRVQ------------GPTTFLPSLT----------------------VQVAMAGAMLIGLHHRICYTTSASVLTEA---------VKQSDLPSGYDHLCQFVMSGQLSDSEKLLESLENFWNGIQE......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 236
27 -10.6006cgr_n mol:protein length:3139 Large tegument protein deneddylase  ali model follow..  13  857................................PPPIATSPTAILLRDLIQRGQTLDAPE--------DLAAWLSVLTDAANQGLIERKPLDELARSIRDINDQQA-----SSGLAELRRFDALDAAL--GQQLDSDAAFVPAPGASPYPDDGGLSPEATRMAEEALRQARA--------MDAAKLTAELAPDARARLRERARSLEAMLEGARERAKVARDAREKFLHKLQGVLRPGLKACPAVLATLR-----ASLPAGWSDLPEAVRGA--------------EVTAALRADMWGLLGQYRDALEHPTPDTATALSGLHP-----SFVVVLKNLFADAPETPFLLQFFADHAPIIAHAVSNAINAGSAAVATADPASTVDAAVRAHRVLVDAVTAGAAASDPASPLAFLAAMADSAAGYVKATRLALDAR-----------------------------VAIAQLTTLGSAAALVVQVRRAANQPEGE--HASLIQAATRATTGARESLAGHEGR--------------------FGGLLH--AEGTAGDHSPSGRAL-QELGKVIGATRRRADELE-MAAQRARSSHERWAAD------VEAVLDRVESGAEFDVVELRRLQALAGTNPYTPENQRHPMLPPLFGAAADTLAGGLLERAQANDGFIDYHEAVLHLSEDLGGVPALRQYVPFFQKGY-LRADARRAIGSVALDLAAAAEEISAVRNDPAAAAELVRVTLPCPSEDALVACVAALERVDQSPVKDTAAFVTRQDLA-DTKDAVVRAKQQRAEATERVTAGLREVLAAR-ERRAQLEAEGLANLKTLLKVVAVPATVAKTLDQARSAEEI----ADQVEIL--VDQTEKARELDVQAVAWLEHAQRTFETHPLSAASGQALFDTRRVEALRRSLEEAEAEWDEVWGRFGRVRGGA...... 1755
28 -10.4002ogi_A mol:protein length:196 Hypothetical protein SAG1661  ali model follow..  11  29.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................NHVLGVERAAIELAER-----------------DKEKAGLAALLHDYAKELSDDHGLVGIYKIQE---DLAIKDQD---ILAAIAKH-----TVGSAQMSTLDKIVYVADYIEHNR--------DFPGVEEARELAKVDLNKAVAYETARTVAFLASKAQPIYPKTIETYNAYIPYL.......................................................................................................................................................................................................................................................................... 195
29 -10.2002rff_A mol:protein length:111 Putative nucleotidyltransferase  ali model follow..  13  1..............................................................GMGKGKSAIESQIRMLKLAKEIVEEVASSFPNLEE--------VYIFGSRARGDYLDTSDIDILFVFKGIKEMNVFDRMYMVSRFI---RGNVDYIVLDEGEKDRVKDK................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 98
30 -10.2002gz4_A mol:protein length:207 Hypothetical protein Atu1052  ali model follow..  14  19.................................................................................................................................................................................................................................................................................................................................................................................................................................................................LDLLDPSPLDVEIADIAHGLARVARW-----------QTRGDHAFTVAQHCLIVETIFCRMCPGATPD-----------------EMQMALLHDAPEYVIGDYKTVEKRLEAAVHLRFGLPPHASRELKDRIKK-------------ADTVAAFFEATELAGFSTAEAQKFFGLPRGITRDMFDIIPLPSTEAQRLFIARFEAIETLRVTRTGGAV................................................................................................................................................................................................................................................................................... 207
31 -10.1001zpv_A mol:protein length:91 ACT domain protein  ali model follow..  13  1.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................SNAMKAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVV------SSDEKQDFTYLRNEFEAFGQT..................... 72
32 -9.9305yep_A mol:protein length:139 Toxin-antitoxin system antidote Mnt family  ali model follow..  19  22........................................................................................................LIYLFGSYSQGTQHRNSDIDIAVLAADTLDNIAR----------WELAQKLASALDSDVDLVDLRSASTVLCQQVVQGKQLWGTQQDDELFAVKTISMYQHQAERQAIIDDVMANTAAKAHRGES....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 138
33 -9.8703rf0_A mol:protein length:209 Exopolyphosphatase  ali model follow..  16  1.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................RHQDIRQRTAKSLADHYNIDEQARRVLETTEQLYTQWLAQNTKLVQP-----QLEALLKWAAMLHEVGLSINSGMHRHSAYILQN-TNLPGFNQEQQTLLATLVRMH--------RKAIKLDELPRLNLFKKKYYLPLIQLLRLSTL............................................................................................................................................................................................................................................................................................................................ 135
34 -9.8002o08_A mol:protein length:188 BH1327 protein  ali model follow..  15  21.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................QHTIGVMETAIDLAK------------------DQQKAELAAIFHDYAKFRDKNE-------MRTLIREKLSQQDILFYGDELLHAPCGAYYVREEVGIEDEDVLQAIRFHTTGRPNMSLL-IIFLADVEKVRTQAKTDLNGAIISSLVNTITFLLKKN............................................................................................................................................................................................................................................................................................ 169
35 -9.6703ccg_A mol:protein length:190 HD superfamily hydrolase  ali model follow..  20  22.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................KHSLGVMDTAVRLAGI-----------------DTEKARIAGLVHDCAKKLPGEK-------IIEICTNEGYELGDEDIRNSYLLHGLAGRILAKKVGIDDEDVLNAIEFHTTGRPNMSLL-IIYIADYIEPGREF-DELRKAADEDLNKALLMSFD.............................................................................................................................................................................................................................................................................................. 161
36 -9.5401miv_A mol:protein length:404 tRNA CCA-adding enzyme  ali model follow..  16  16...................................................................................................KQHGYDAYFVGGAVRDLLLPIGDVDI-------ATSALPEDVMAIFPKTIDVGSKHG-TVVVVHKGKAYEVTTFKTDGDYEDYR---------------------RPESVTFVRSLEEDLKRRDFTMNAIAMDEYGTIIDPFGGREAI--------------------------------------------------------------RRRIIRTVG---------------------------------------------------------------------------EAEKRFREDALRMMRAVRFVSELGFALAPDTEQAIVQNAPLLAH---SVERMTMEMEKLLGGP-FAARALPLLAETGLN-AYLPGLAG-----KEKQLRLAAAYRWPW----------------------------LAAREERWALLCHALGV-----------QESRPFLRAWKLPNKVVDEAGAILTALLFSAGLERALSVETVRAAFTGAPPGPWHEKLRRRFIKTKGELAVNGKDVIEPWVKEALDAIWRAVVN................................................................................................................................................................................................................................................................................................. 379
37 -9.5101ou5_A mol:protein length:448 tRNA CCA-adding enzyme  ali model follow..  13  61...................................................................................................VKENHELRIAGGAVRDLLNKPQDIDFA--TTATPTQMKEMFQSAGIRMINNRGEKHG----TITARLHEENFEITTIDVTTDGR----------------------HAEVEFTTDWQKDAERRDLTINSMFLGFDGTLFDYFNGYEDLKN---------------------------------------KVRF-----VGHAKQR----------------------------------------------------------------------------------------------IQEDYLRILRYFRFYGRIVDDHDPETLEAIAENAKGLAG---SGERIWVELKKILVGN-HVNHLIHLIYDLDVAPYIGLPANASLEEFDK---------------------------------VSKNVDGFSPKPVTLLASLFKVQDD-------------VTKLDLRLKIAKEEKNLGLFIVKNRKDLIKATDSSDP---TRVCELLKYQGEHCLLKEMQQWSIPPFPVSGHDIRK--SGKEIGALLQQLREQWKKSGYQMEKDELLSYIKK............................................................................................................................................................................................................................................................................. 441
38 -9.1203qi3_A mol:protein length:533 High affinity cGMP-specific 3`,5`-cyclic phosphodiesterase 9A  ali model follow..  15  206....................................................................................................................................................................................................................................................................................................................................................................................................................................................................WEPNEMLSCLEHMYHDLGLVRDFLRRW-CVHDNYRNNPFHNFR---HCFCVAQMMYSMVWL---------CSLQEKFSQTDILMTAAICHDL------DHPGYNNTYQINARTELAVRYNDISPLE---NHHCGMITLILATDMA--EIMDSFKEKMENFDTLLKMILIKCCDISNEVREVAEPWVDCLLEEYFMQSDREKSEG............................................................................................................................................................................................................................................................................................ 435
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Jaroszewski L, Godzik A. Tolerating some redundancy significantly speeds up clustering of large protein databases. Bioinformatics. 2002 Jan;18(1):77-82.