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Query: ACL93482.1, from C.crescentus

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSEALKPGGGIKPDLPFTPVRVAVLTITDTRDEASDTSGQILVERIKAAGHELGGRVVVRDDIEQIRAQVRSWIDSKTVDAIVTTGGTGLTGRDVTVEALEPLFDKKIDGFSVVFHLVSYASVGLSTLQSRATAGLIESVFVFCLPGSNGAVKDGWDKVIAAQLDSRHKPCNMVELMPRLLERLast
1 -66.7001mkz_A mol:protein length:172 Molybdenum cofactor biosynthesis protein B  ali model follow..  41  2..........SQVSTEFIPTRIAILTVSNRRGEEDDTSGHYLRDSAQEAGHHVVDKAIVKENRYAIRAQVSAWIASDDVQVVLITGGTGLTEGDQAPEALLPLFDREVEGFGEVFRMLSFEEIGTSTLQSRAVAGVANKTLILAMPGSTKACRTAWENIIAPQLDARTRPCNFHPHLKK.... 170
2 -62.7001y5e_A mol:protein length:169 Molybdenum cofactor biosynthesis protein B  ali model follow..  40  2.......SVTEHKKQAPKEVRCKIVTISDTRTEETDKSGQLLHELLKEAGHKVTSYEIVKDDKESIQQAVLAGYHKEDVDVVLTNGGTGITKRDVTIEAVSALLDKEIVGFGELFRMISYEDIGSSAMLSRAIGGTIGRKVVFSMPGSSGAVRLAMNKLILPELGHI................ 162
3 -60.9001jlj_A mol:protein length:189 gephyrin  ali model follow..  26  1.....MATEGMILTNHDHQIRVGVLTVSDSRNLAEDRSGINLKDLVQDPGGTISAYKIVPDEIEEIKETLIDWCDEKELNLILTTGGTGFAPRDVTPEATKEVIEREAPGMALAMLMGSLN-VTPLGMLSRPVCGIRGKTLIINLPGSKKGSQECFQFILPALPHAIDLLRDAIVKVKEVHDR 182
4 -60.9001ihc_A mol:protein length:188 Gephyrin  ali model follow..  25  1.....MATEGMILTNHDHQIRVGVLTVSDSRNLAEDRSGINLKDLVQDPGGTISAYKIVPDEIEEIKETLIDWCDEKELNLILTTGGTGFAPRDVTPEATKEVIEREAPGMALAMLMGSLNVT-PLGMLSRPVCGIRGKTLIINLPGSKKGSQECFQFILPALPHAIDLLRDAIVKVKEVHDE 182
5 -60.7003iwt_A mol:protein length:178 178aa long hypothetical molybdenum cofactor biosynthesis protein B  ali model follow..  31  1....MSHAHKKHKENAPKSLNFYVITISTSREPIVDESGDIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDALSIDEVDVIISTGGTGYSPTDITVETIRKLFDREIEGFSDVFRLVSFNDPEAAAYLTKASAGIIGKKIVYLLPGSPDAVKLALKELILPEVGHL................ 172
6 -60.2003tcr_A mol:protein length:199 Molybdopterin biosynthesis protein  ali model follow..  28  22...RTVTVASMAELEAGPVGRSLVVIVNDRTAHDQDTSGPLVTELLAEAGFVVDGVVVVENDLSEIQNAVNTAVI-GGVDLVVTVGGTGVTPRDVAPEATQPLLDRELLGIAEAIRSSGLAAGVTEAGLSRGVAGISGSTLVVNIAGSRAAVRDGMATLTPMAIQIIEQLSSLE......... 192
7 -60.0003rfq_A mol:protein length:185 Pterin-4-alpha-carbinolamine dehydratase MoaB2  ali model follow..  26  15...LGYSVAPMEQGAELVVGRALVVVVDDRTAHDEDHSGPLVTELLTEAGFVVDGVVAVEADEVDIRNALNTAVI-GGVDLVVSVGGTGVTPRDVTPESTREILDREILGIAEAIRASGLSAGIIDAGLSRGLAGVSGSTLVVNLAGSRYAVRDGMATLNPLAAHIIGQLSS........... 183
8 -58.5004xcw_A mol:protein length:178 Molybdopterin adenylyltransferase  ali model follow..  22  1..............QGMQTIHIGVLSASDRKGVYEDLSGKAIQEVLSEYLLNEFHYEIVADERDLIEKSLIKMCDEYQCDLVVTTGGTGPALRDITPEATKKVCQKMLPGFGELMRMTSLKYVPTA-ILSRQSAGIRNKSLIINLPGKPKSIRECLEAVFPAIPYCVDLILGNYMQVNEKNIQ 172
9 -58.1002pbq_A mol:protein length:178 Molybdenum cofactor biosynthesis MOG  ali model follow..  27  4.................KKAVIGVVTISDRKGIYEDISGKAIIDYLKDVIITEVEYRVIPDERDLIEKTLIELADEKGCSLILTTGGTGPAPRDVTPEATEAVCEKMLPGFGELMRQVSLKQVPTA-ILSRQTAGIRGSCLIVNLPGKPQSIKVCLDAVMPAIPYCIDLIGGAYIDTDPNKVK 172
10 -57.8001uuy_A mol:protein length:167 MOLYBDOPTERIN BIOSYNTHESIS CNX1  ali model follow..  28  2...............PGPEYKVAILTVSDTAGAGPDRSGPRAVSVVDSSGAKVVATAVVPDEVERIKDILQKWSDVDEMDLILTLGGTGFTPRDVTPEATKKVIERETPGLLFVMMQESLKITP-FAMLARSAAGIRGSTLIINMPGNPNAVAECMEALLPALKHALKQIKG........... 164
11 -57.8002is8_A mol:protein length:164 Molybdopterin biosynthesis enzyme, MoaB  ali model follow..  27  2...................FRVGILTVSDKRGERQDTTHLAIREVLAGGPFEVAAYELVPDEPPMIKKVLRLWADREGLDLILTNGGTGLAPRDRTPEATRELLDREVPGLAELMRLVGLRKTPMA-ALSRGVAGVRGRTLILNLPGSPKGARESLEAVLPVLPHALSLVTGKPWKEGH.... 162
12 -57.7001o8q_A mol:protein length:167 MOLYBDOPTERIN BIOSYNTHESIS CNX1 PROTEIN  ali model follow..  28  2...............PGPEYKVAILTVSDTAGAGPDRSGPRAVSVVDSSGAKVVATAVVPDEVERIKDILQKWSDVDEMDLILTLGGTGFTPRDVTPEATKKVIERETPGLLFVMMQEALKITP-FAMLSRSAAGIRGSTLIINMPGNPNAVAECMEALLPALKHALKQIKGDKR........ 167
13 -57.5003k6a_A mol:protein length:180 Molybdenum cofactor biosynthesis protein Mog  ali model follow..  24  1.............SNAMSKAKIGIVTVSDRAGIYEDISGKAIIDTLNDYLTSEPIYQVIPDEQDVIETTLIKMADEQDCCLIVTTGGTGPAKRDVTPEATEAVCDRMMPGFGELMRAESLKFVPTA-ILSRQTAGLRGDSLIVNLPGKPKSIRECLDAVFPAIPYCIDLMEGPYLECNEAVIK 173
14 -57.4001o8n_A mol:protein length:167 MOLYBDOPTERIN BIOSYNTHESIS CNX1 PROTEIN  ali model follow..  28  2...............PGPEYKVAILTVSDTAGAGPDRSGPRAVSVVDSSGAKVVATAVVPDEVERIKDILQKWSDVDEMDLILTLGGAGFTPRDVTPEATKKVIERETPGLLFVMMQESLKITPFA-MLSRSAAGIRGSTLIINMPGNPNAVAECMEALLPALKHALKQIKGDKR........ 167
15 -57.4004nwo_A mol:protein length:177 Molybdenum cofactor biosynthesis protein MogA  ali model follow..  24  1................MSKAKIGIVTVSDRAGITADISGKAIILALNLYLTSEPIYQVIPDEQDVIETTLIKMADEQDCCLIVTTGGTGPAKRDVTPEATEAVCDRMMPGFGELMRAESLKEVPTA-ILSRQTAGLRGDSLIVNLPGDPASISDCLLAVFPAIPYCIDLMEGPYLECNEAMIK 170
16 -57.0001uux_A mol:protein length:163 MOLYBDOPTERIN BIOSYNTHESIS CNX1  ali model follow..  29  2...............PGPEYKVAILTVSDTAGAGPDRSGPRAVSVVDSSGAKVVATAVVPDEVERIKDILQKWSDVDEMDLILTLGGTGFTPRDVTPEATKKVIERETPGLLFVMMQESLKITPFA-MLSRSAAGIRGSTLIINMPGNPNAVAECMEALLPALKHALKQIA............ 163
17 -56.4004twg_A mol:protein length:161 Molybdopterin biosynthesis Mog protein  ali model follow..  23  3.................TARSAQIIIASTRSGVYTDECGPIIAEWLEQRGFSPLESKVVADGNPVGEALQDAVE--AQVDLIITSGGTGISPTDSTPEQTVAVLDFVIPGLADAIRRAGLPKVP-TSVLSRGVCGVAGQTLIVNLPGSPGGVRDGLDVLADVVHHALDQIAGQDHR....... 160
18 -56.2001di6_A mol:protein length:195 MOLYBDENUM COFACTOR BIOSYNTHETIC ENZYME  ali model follow..  22  1................MATLRIGLVSISDRSGVYQDKGIPALEEWLTSALTTELETRLIPDEQAIIEQTLCELVDEMSCHLVLTTGGTGPARRDVTPDATLAVADREMPGFGEQMRQISLHFVPTA-ILSRQVGVIRKQALILNLPGQPKSIKETLEGVKDAEGNVVVHG............. 157
19 -56.0003oi9_A mol:protein length:164 Molybdenum cofactor synthesis domain  ali model follow..  23  2.............PGSMTTRSARVIIASTRSGEYEDRCGPIITEWLAQQGFSSAQPEVVADGSPVGEALRKAIDD--DVDVILTSGGTGIAPTDSTPDQTVAVVDYLIPGLAEAIRQSGLPKVP-TSVLSRGVCGVAGQTLIVNLPGSPGGVRDGLGVLAGVLDHALDQLAGKDHP....... 163
20 -54.3002g4r_A mol:protein length:160 molybdopterin biosynthesis Mog protein  ali model follow..  21  1................MSTRSARIVVVSSRAGVYTDDCGPIIAGWLEQHGFSSVQPQVVADGNPVGEALHDAV--NAGVDVIITSGGTGISPTDTTPEHTVAVLDYVIPGLADAIRRSGLPKVP-TSVLSRGVCGVAGRTLIINLPGSPGGVRDGLGVLADVLDHALEQIAG........... 155
21 -52.6002g2c_A mol:protein length:167 Putative molybdenum cofactor biosynthesis protein  ali model follow..  16  1..............SNAMHIKSAIIVVSDRTGTRENKALPLLQRLMSDESYELISEVVVPEGYDTVVEAIATALK-QGARFIITAGGTGIRAKNQTPEATASFIHTRCEGLEQQILIHGSTHTHLA-GLSRGIVGVTGAALIVNAPSSSGGITDTWAVISPVIPNIFEGLDAS.......... 167
22 -51.6004lhb_A mol:protein length:186 Molybdopterin adenylyltransferase  ali model follow..  30  7.RGSHMMGVEEHKKEAPKTFKFGVITVSDKKGEREDKSGPLIIEELSKLGEHVYYK-IVPDDKIEVLIALFEAIK-SGADVVVTTGGTGITRRDITIESIKPLFDKELSFGEVFRAKSYEE-VGYATVLTRATAGIERIVVVFSLPGSVNAVKTGLEIIKSEVFHILKHARE........... 180
23 -30.4005g2r_A mol:protein length:471 MOLYBDOPTERIN BIOSYNTHESIS PROTEIN CNX1  ali model follow..  21  180...GLLATAGVTMVKVYPMPIVAILSTGDERGQIRDSNRAMLVAAVMQQQCKVVDLGIVRDDRKELEKVLDEAVSS-GVDIILTSGGVSMGDRDFVKPLLEEKGK-------VYFSKVLMKPGKPLTFAE-TESMLGKTVLAFGLPGNPVSCLVCFNIFVVPTIRQLAG.............. 351
24 -30.1006gb4_A mol:protein length:460 Molybdopterin biosynthesis protein CNX1  ali model follow..  21  175...GLLATAGVTMVKVYPMPIVAILSTGDERGQIRDSNRAMLVAAVMQQQCKVVDLGIVRDDRKELEKVLDEAVSS-GVDIILTSGGVSMGDRDFVKPLLEEKGK-------VYFSKVLMKPGKPLTFAE-TESMLGKTVLAFGLPGNPVACLVCFNIFVVPTIRQLAG.............. 346
25 -29.7001t3e_A mol:protein length:421 Gephyrin  ali model follow..  17  168...GLLATVGVTEVEVNKFPVVAVMSTGNEPGKIRDSNRSTLLATIQEHGYPTINLGIVGDNPDDLLNALNEGI--SRADVIITSGGVSMGEKDYLKQVLDIDLHAQI-----HFGRVFMKPGLPTTFATLDIDG--VRKIIFALPGNPVSAVVTCNLFVVPALRKMQG.............. 333
26 -29.5006FGD Entity 1(prereleased)  ali follow..  17  166...GLLATVGVTEVEVNKFPVVAVMSTGNEPGKIRDSNRSTLLATIQEHGYPTINLGIVGDNPDDLLNALNEGI--SRADVIITSGGVSMGEKDYLKQVLDIDLHAQI-----HFGRVFMKPGLPTTFATLDIDG--VRKIIFALPGNPVSAVVTCNLFVVPALRKMQG.............. 331
27 -27.3001fc5_A mol:protein length:411 MOLYBDOPTERIN BIOSYNTHESIS MOEA PROTEIN  ali model follow..  18  162...PVIASLGIAEVPVIRKVRVALFSTGDEDGQIYDTNRLAVHLMLEQLGCEVINLGIIRDDPHALRAAFIEAD--SQADVVISSGGVSVGEADYTKTILEELGE-------IAFWKLAIKPGKPFAF------GKLSNSWFCGLPGNPVSATLTFYQLVQPLLAKLSG.............. 321
28 -27.0001uz5_A mol:protein length:402 402AA LONG HYPOTHETICAL MOLYBDOPTERIN BIOSYNTHESIS MOEA PROTEIN  ali model follow..  23  165...ALLSAVGINKVKVFRKPKVAVISTGNEPGQIYDINGRALCDAINELGGEGIFMGVARDDKESLKALIEKAV--NVGDVVVISGGASGGTKDLTASVIEELGE-------VKVHGIAIQPGKPTII------GVIKGKPVFGLPGYPTSCLTNFTLLVVPLLLRALG.............. 324
29 -25.6001xi8_A mol:protein length:403 Molybdenum cofactor biosynthesis protein  ali model follow..  17  168...ALLKALGIRKVPVKVKPKVGIIITGSEKGKIVDTNSIMLSALVERYFGEPILYGVVPDNEDLIRSALEKAK--RECDLVLITGGSAFGDMDYAHKFVN-----------LLFHGTTIRPGRPIGY----------GERVFVMSGYPVAVFTQFHLFVKHALAKLVG.............. 321
30 -25.5001wu2_A mol:protein length:396 molybdopterin biosynthesis moeA protein  ali model follow..  15  167...AMLKALGIKKVPVKVKPKVGIIITGSEEGKIVETNSIMLQGLVEKFFGEPILYGVLPDDESIIKETLEKAK--NECDIVLITGGSAFGDKDYAHKFVN-----------LLFHGTTIKPGRPFGY----------GEKVFIMSGYPVSVFAQFNLFVKHALAKMVG.............. 320
31 -25.2003kbq_A mol:protein length:172 Protein Ta0487  ali model follow..  18  2.................NAKNASVITVGNEKGRTVNTNAAFIGNFLTYHGYQVRRGFVVMDDLDEIGWAFRVAL--EVSDLVVSSGGLGPTFDDMTVEGFAKCIGQDLRIDEDALAMIKMAKIPPSCRPIENPVGTAGGKKVIILPGVPKEMEALLKAMEKDII................... 169
32 -17.5004ct8_A mol:protein length:394 CINA-LIKE PROTEIN  ali model follow..  18  2...................ERAEILGVGTEYGETLDTNTAEIARSLKPYALKVERTLRVADEVAPLAREVEEAF--ARARLVVLSGGLGPTPDDVTREAVALALGEPLGEIEAFFRARGRAMPEANRKQAMRIPSATGGKDLVLLPGPPPEWRPMWQEVLPRLGLP................. 171
33 -9.6105a4m_S mol:protein length:278 HYDROGENASE-1 SMALL CHAIN  ali model follow..  8  1.............LENKPRIPVVWIHGLECTCSFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQNGKYILAVEGNPPLGEQGMFIEKLKRAAAGAIIAWGTCASWGCVQAARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIIT....................... 161
34 -9.5701e3d_A mol:protein length:266 [NiFe] hydrogenase small subunit  ali model follow..  8  1.............ALTGSRPSVVYLHAAECTGALLRTYQPFIDTLILDTISLDYHETIMAAAGEAAEEALQAAVNGPDGFICLVEGAIPTGMDNKMYDICKNILPKAVVSIGTCACYGGIQAAKPNPTAAKGINDCYADVKAINVPGCPPNPLNMVGTLVAFL.................... 165
35 -9.1103ono_A mol:protein length:214 Ribose/Galactose Isomerase  ali model follow..  14  3....................AMKIALMMENSQAKNAMVAGELNSVAGGLGHDVFNVGMTDENDHHLGIMASILLNSKAVDFVVTGCGTGQG---------ALMSCNLHPGV-----VCGYCLEPSDAFLFNQI----NNGNAISLAFAKGFGWAGELNV........................ 129
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 4 5 9   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Li W, Godzik A. In search for more accurate alignments in the twilight zone. Protein Sci. 2002 Jul;11(7):1702-13.