current user: public

If you have questions about the server, please let us know.

Query: ACL93485.1, from C.crescentus

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .  310    .  320    .  330    .  340    .
# Score Template Links and tools%idFirst MTPYDDSPAQAVSTAPRTTGPSLIDGFGRAVTYLRVSVTDRCDLRCVYCMAEHMTFLPKAEVLTLEELDRLASTFVGLGVRKLRLTGGEPLVRKGFIGLVARLSRHLSSGALDELTLTTNGSQLERYASDLARHGVRRINVSLDTLKPALFRALTRGGDVTRVIAGIDAAQAAGMTVKINAVALKHDNAGEIPALIQWAHGRGCDITLIETMPLGEVDQDRTDQFLSLQDVRRDLSSFWTLTDIPDSTGGPARYVHVAETGGRLGLITPLSNHFCDTCNRVRLTCTGTLHTCLGRDDASDLRAEIRRGASDAELVDAIHLAIGAKPKGHDFQIAAAQPAVARHMSTTGGLast
1 -106.0001tv7_A mol:protein length:340 Molybdenum cofactor biosynthesis protein A  ali model follow..  32  1..................MVEQIKDKLGRPIRDLRLSVTDRCNFRCDYCMPKDFVFLPKNELLTFDEMARIAKVYAELGVKKIRITGGEPLMRRDLDVLIAKLNQI---DGIEDIGLTTNGLLLKKHGQKLYDAGLRRINVSLDAIDDTLFQSINNRNIATTILEQIDYATSIGLNVKVNVVIQKGINDDQIIPMLEYFKDKHIEIRFIEFMDVGNDNGWDFSKVVTKDEMLTMIEQHFEIDPVPKYFGEVAKYYRHKDNGVQFGLITSVSQSFCSTCTRARLSSDGKFYGCLFATVDFNVKAFIRSGVTDEELKEQFKALWQIRDDRYSDERTAQTVAKKINMNYIGG 340
2 -58.9005vsl_A mol:protein length:318 Radical S-adenosyl methionine domain-containing protein 2  ali model follow..  14  3....EQPQVRGELEETQETQEDGNSTQRTTPVSVNYHFTRQCNYKCGFCFHTA----KTSFVLPLEEAKRGLLLLKQAGLEKINFSGGEPFLQDRGEYLGKLVRFCKEELALPSVSIVSNGSLIRERWFKDYGEYLDILAISCDSFDEQVNALIGRGQGKKNHVENLQKLRDYKVAFKINSVINRFNVDEDMNEHIKALSPKVFQCLLIEGENSGEDAREAERFLISNEEFETFLERHKEVSCVPESNQKMKDSYLILDEYMR--FLNCTGGRKDPSKSILDVGVEEAIKFSGFDEKMFLKRGGKYVWSKADLKLD................................. 317
3 -58.6006b4c_A mol:protein length:298 Viperin  ali model follow..  13  4........................VRTGQVPVSVNYHFSRKCNKECLFCFHTA----TTSHVEKPENAKRGLTLLKQAGMKKINFAGGEPFLYPKF--LGEMIDFCKETLQLESVSIVTNGSLVKEQFLQKHGRNIDILAVSCDSFNEATNIKIGRGDNVQKLYEIGSWCQKYDIKFKLNTVVNKFNHLEDMNDHLNAL--QPFRWKCFQVLIVTGEN--DSDKTLRNAHSLTISDDEFDRFCERHSSQTCLVPEPNRLMAKSYLILDEYMRFLDRNGQQPSKSILEVGVQQALQAVFWDEEAFVERGGIYDWNKSSCSSDSKDLE....................... 297
4 -35.4006c8v_A mol:protein length:394 Coenzyme PQQ synthesis protein E  ali model follow..  17  24.................................LLAELTHRCPLRCPYCSNPLELDRRSAE-LDTQTWLRVLTEAAGLGVLHVHLSGGEPTARPDIVEITAKCAELG------YSNLITSGVGGLAKLDALYDVGLDHVQLSVQGVDAANAEKIGGKNAQPQKMQFAARVTELGLPLTLNSVIHR-GNIHEVPGFIDLAVKLGAKLEVAHTQYYGWAYVNRAALMPDKSQVDESIRIVEAARERLKGQLVIDLVVPDYYAKYPKACAGGWGRKLMN------VTPQGKVLPCHAAETIPGLE----WYVTDHALGEIWTKSPAFAAYRGTSWMKEPCRSCDRREKDWGG 326
5 -35.1005v1q_A mol:protein length:459 Radical SAM  ali model follow..  15  123.................................LVIYPSMYCDLKCGFCFLAN---REDRNAKPAKDWERILRQAKDNGVLSVSILGGEPTRYFDIDNLLIACEELK------KTTITTNAQLIKSTVEILAKSKYITPVLSLQTLDSKLNFEL-MGVRPDRQIKLAKYFNEVGKKCRINAVYTKQ-SYEQIIELVDFCIENKIDFSVANYSEVTGYTKIKKKYDLADRLNEYVTDYITQREANLNFATEGCHLFTAYPELINNSIEFSEFDEMYYGCTKMEIMSNGDILPCIAFLG----VNQTKQNAFEKDLLDVWYDDPLYGGIRSFRTKNSKCLSCGLLKICEGG 432
6 -30.5005wgg_A mol:protein length:453 Radical SAM domain protein  ali model follow..  13  91.........................DRKSVVKALCLHISHDCNLRCKYCFASTGNFGGQRNMMSLEVGKKAIDFLISESGNEIDFFGGEPMMNFDVKGIIEYARQKEKEHNKNRFTLTTNGLLLNDENIKYINENMQNIVLSIDEVNDRMRIRIDGSGCYDDILPKFKYVAESRNQDNYYVGTFTRENMDFSNDVLHLADEGFRQISVEPVVAAKDSGYDLRE-----EDLPRLFEEYEKLAYEYVKRRKEGNWFNFFHFMIDLTQGPCIVKR-CGS-EYLAVTPEGDIYPCFVGNEKFKMGNVKEGVLNRDIQNYFKNSNVYTKKE...................... 402
7 -27.8002yx0_A mol:protein length:342 radical sam enzyme  ali model follow..  13  73.................................QMTPVLAWCTHNCIFCWRPMENFLGTELPQPWDDPAFIVEESIKAQRKLLISLSGEPMLYPYMGDLVEEFHKRG------TTFIVTNGTIPEREEMIKEDKLPTQLYVSITAPDIETYNSVNIPDGWERILRFLELMRDLPTRTVVRLTLVKGENMHSPEKYAKLILKARPMVEAKAYMFVGSRNRLTINNMPSHQDIREFAEA................................................................................................................ 301
8 -27.6004k36_A mol:protein length:392 Anaerobic sulfatase-maturating enzyme  ali model follow..  12  2............................PPLSLLIKPASSGCNLKCTYCF-SDNRNVKSYGIMRDEVLESMVKRVLNEANGHCSFAGGEPTLA--FEKLMELQRKHNYKNLKIYNSLQTNGTLIDESWAKFLSENKFLVGLSMDEIHNLNRKDCCGLDTFSKVERAAELFKKYKVEFNILCVVTSN-TARHVNKVYKYFKEKD--FKFLQFINCLDPLYEEKGKYNYSLKPKDYTKFLKNLFDFWYEDFLNGNRVSIRYFDGLLETILLGKSSSCGMNGTFVVESDGSVYPC----DFYVLDKWRLGNIQDMTMKELFETNKNHEFIKLSFKVHEECKKCKWFRLCKGG 329
9 -27.4004m7t_A mol:protein length:270 BtrN  ali model follow..  13  21................................MIEVEVNSQCNRTCWYC-PNSVSKRKETGEMDPALYKTLMEQLSSLDAGRISFHFGEPLLCKNLDLFVGMTTEYIP----ARPIIYTNGDFLEKRLQTLTELGIQKFIVTQHAGAKHKFRGVYDQLAGADKEKVVYLDHSDLVLSNRGGILDNIPQASKPSNLAVVTVLGNVLPCFEDFMVMGNIGEQHISDIWHNDKFTSFRKMLKE---------------------------HRGKSDLCKNCNNVSVQTEEQYDYVL........................................................ 264
10 -27.3004m7s_A mol:protein length:269 BtrN  ali model follow..  13  6...............................SMIEVEVNSQCNRTCWYC-PNSVSKRKETGEMDPALYKTLMEQLSSLDAGRISFHFGEPLLCKNLDLFVGMTTEYIP----ARPIIYTNGDFLEKRLQTLTELGIQKFIVTQHAGAKHKFRGVYDQLAGADKEKVVYLDHSDLVLSNRGGILDNIPQASKPSNLAVVTVLGNVLPCFEDFMVMGNIGEQHISDIWHNDKFTSFRKMLKE---------------------------HRGKSDLCKNCNNVSVQTEEQYDYVLNSSSVDKLAAALE........................................... 263
11 -26.5006djt_A mol:protein length:331 S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase  ali model follow..  10  68.................................QCTPSVIWCQQNCIFCWRVLPRDIGIDKEPKWEEPEVVYEKILAMHKRIIMSLSGEPTLYPYLDELIKIFHKNG------TTFVVSNGILTDV----IEKIEPTQLYISLDAYDLDSYRRICGKEYWESILNTLDILKEKKRTCIRTTLIRG--YNDDILKFVELYERADVHIELKSYMHVGSQKRLKKEDMLQHDEILKLAKMLDENSSYK--------------------LIDDSEDSRVALLQNENRKINPKL............................................................ 325
12 -21.5003t7v_A mol:protein length:350 methylornithine synthase PylB  ali model follow..  14  32...LSLESKEGLERLYSAARKVRDHYFGNRVFLNCIYFSTYCKNQCSFC---NCRNEINRYRLTMEEIKETCKTLKGAGFHMVDLTMGEPYYYEDPNRFVELVQIVKEELGLP--IMISPGLMDNATLLKAREKGANFLALYQETYDTELYRKLRVGQSFDGRVNARRFAKQQGYCVEDGILTGVGNDIESTILSLRGMSTNDPDVRVMTFLPQEGTPLEGFRDKSNLSELKII................................................................................................................... 262
13 -21.2004jy8_A mol:protein length:358 FEFE-HYDROGENASE MATURASE  ali model follow..  14  47................KLADEIRRKYVGDEVHIRAIEFSNVCRKNCLYCGLRRDNKNLKRYRMTPEEIVERARLAVQFGAKTIVLQSGE---YYMPDVISDIVKEIKKMGVAVTLSL---GEWPREYYEKWKEAGADRYLLRHETANPVLHRKLRPDTSFENRLNCLLTLKELGYETGAGSMVLPGQTIDDLVDDLLFLKEHDFDVGIGPFIPHPDTPLANEKKGDFTLTLKMV................................................................................................................... 263
14 -21.1005fep_A mol:protein length:358 [FeFe] hydrogenase maturase subunit HydE  ali model follow..  14  47................KLADEIRRKYVGDEVHIRAIEFSNVCRKNCLYCGLRRDNKNLKRYRMTPEEIVERARLAVQFGAKTIVLQSGED--YXMPDVISDIVKEIKKMGVAVTLSL---GEWPREYYEKWKEAGADRYLLRHETANPVLHRKLRPDTSFENRLNCLLTLKELGYETGAGSMVLPGQTIDDLVDDLLFLKEHDFDVGIGPFIPHPDTPLANEKKGDFTLTLKMV................................................................................................................... 263
15 -20.8005tgs_A mol:protein length:263 7-carboxy-7-deazaguanine synthase  ali model follow..  12  37...........................GQKTMFVRTA----CDYSCSWCDSAFTSAKKDIRWMTAEEIFAELKDIGGDAFSHVTISGGNPALLKQLDAFIELLKENN------RAALETQGTVYQDWFTLI---------LTISP----KPPSSKMVTNFQKLDHILTSLQENDRQHAVSLKVVIF-NDEDLEFAKTVHKRYPGIPFYLQ........................................................................................................................................... 202
16 -20.4003c8f_A mol:protein length:245 Pyruvate formate-lyase 1-activating enzyme  ali model follow..  16  4...........................GRIHSFESCGTVD-CLMRCLYCHNRDTWDTHGGKEVTVEDLMKEVRHFMNASGGGVTASGGEAILQAE---FVRDWFRACKKEGIHTCLDTNGFVRRYDPVIDELLEVTDLVMLDLKQMNDEIHQNLVGVSN-HRTLEFAKYLANKNVKVWIRYVVVPGWSDDSAHRLGEFTRDMG-NVEKIELLPY....................................................................................................................................... 201
17 -18.6004rtb_A mol:protein length:477 HydG protein  ali model follow..  15  76................WQARKVKEEIYGKRIVLF-LYLSNICINNCSYCSFRRENKELSRVRLSLEEAVDEAKAIREMGHTRILLVMGEEPEDKTLSYLEEIIPAIYSEVDIRRINVNI-APLTLKGYERLKKLKIGTYQLFQESYNPEVYREVGPKTNFLWRLNAVERAIEAGI-DDIGIGALFGLGDGVIAHADYLKKKFGIGPHTVSVPRL....................................................................................................................................... 281
18 -18.3001r30_A mol:protein length:369 Biotin synthase  ali model follow..  14  62.................................LLSIKTGACPEDCKYCSSRYKTGLEAERLMEVEQVLESARKAKAAGSTRFCMGAAWKNPHERDMPYLEQMVQGVKAMGLE--ACMTLGTLSESQAQRLANAGLDYYNHNLDT-SPEFYGNIITTRTYQERLDTLEKVRDAGIKVCSGGIVGLGETVKDRAGLLLQLANLPTPPESVMLVKVKGTPLADNDDVDAFDFIRTI................................................................................................................... 264
19 -17.9004u0o_B mol:protein length:296 Lipoyl synthase 2  ali model follow..  15  55.................................TFLLLGPTCTRACAFC---QVEKGHAPAAVDPEEPTKIAAAVATLGLRYVVLTARDDLPDQGAGQFVATMAAIRQRCPGTEIEVDRGRLSQRDCIAQIVAAQPACYNHNLETV-RRLQGPVRRGATYESSLRVLATVKELNPDIPTKSGLMLGLGEAEIIETLKDLRRVGCDRLTLGQY......................................................................................................................................... 240
20 -17.1004wcx_A mol:protein length:480 Biotin and thiamin synthesis associated  ali model follow..  14  59...LNVEDEDLLNEMFKVARYIKEEIYGNRIVIFALYVSNYCVNNCRYC---RHSNEQQRKKLTMEEVRREVEILEEMGHKRLAVEAGEDPVNCPIDYIVDVIKTIYDTKLKNGSIRRVNAATTVENYKKLKKVGIGTYVLFQETYHRPTYEYMGPKHDYDYHLTAMDRAMEAGI-DDVGLGVLYGLYDYKYETVAMLYHANHLEISVPRLRPALNISIDKFPYIVSDKDFKKLVA................................................................................................................. 305
21 -16.7004njg_A mol:protein length:230 7-carboxy-7-deazaguanine synthase  ali model follow..  15  2.....GSSSSGLVPRGSHMTYAVKEIFGRPAVFCRFA----CNLWSGREDFVGTDGENGGKFKDADALVATIAGLWPAAHRFVVCTGGEPMLQLDQ-PLVDALHAAG------GIAIETNGSL--------VLESIDWICVSPKADAPLVVTKGNELKVV-IPQDNQRLADYAKLDFEYFLVQPMDGPSDLNTKLAIDWCKRHPQWRLSMQT......................................................................................................................................... 217
22 -16.7001olt_A mol:protein length:457 OXYGEN-INDEPENDENT COPROPORPHYRINOGEN III OXIDASE  ali model follow..  14  23YTSYPTALEFSEDFGEQAFLQAVARYPERPLSYVHIPF---CHKLCYFCGCNKIVTRQQHKADQYQEIVHRAPLFAGRHVSQLHWGGGTPLNKAQISRLMKLLRENFQFNADAEISIEVDREIELDVLDHLRAEGFNRLSMGVQDFNKEVQRLVNREQDEEFIFALLNHAREIGFT-STNIDLIYGLPKQTPESFAFTLK------RVAELNP-----DRLSVFNYAHLPTIFAAQRKIKDADLPSPQQKLDILQETIAFLTQSGYQFIGMDHFARPDDELAVAQEGVLHRNFQGYTTQGDTDLLGMGVS....................................... 327
23 -16.6005exi_A mol:protein length:331 Lipoyl synthase  ali model follow..  19  92......................................GDQCTRRCDFCQID----TGKPAELDRDEPRRVADSVRTMGLRYATVTG-----AWLYAATVRAIKELNPSTGVE--LLIPDFNGEPTRLAEVFESGPEVLAHNVETV-PRIFKRIRPAFTYRRSLGVLTAARDAGLVTKSNLILGLGETSDEVRTALGDLRDAGCDIVTITQY......................................................................................................................................... 263
24 -16.3004r33_A mol:protein length:420 NosL  ali model follow..  13  70...ALWEDRSIGTAELQAAAEARCGARRPRLHTF-LYTTNYCDSECKMCSMRKGNHRLDRKFSGRKEITEQLELYHHEGVRGVGFLTGEEDKHTRLASAFRIGWAIRTALDLGFERVYFNGSMEQDEIDVLGEEDPVTMCVFQESYDRETYRRFVPKADFDRRVVSFDRWLDAGYR-YVNPGVLVGLHDDLSAELVSLVA..................................................................................................................................................... 280
25 -15.9003can_A mol:protein length:182 Pyruvate-formate lyase-activating enzyme  ali model follow..  10  7..................................................................................VTFCGGEPLLHPE---FLIDILKRCGQQGI-HRAVDTTLLARKETVDEVMRN-CELLLIDLKSMDSTVHQTFCDVPN-ELILKNIRRVAEADFPYYIRIPLIEGVNADEIKLSAEFLASLPRHPEIINLLPYHDIGKGKHAKL-----SIYNPKGYKMQTPSEEVQQQCIQILTDYGLKATIG.................................................................................... 181
26 -14.9002a5h_A mol:protein length:416 L-lysine 2,3-aminomutase  ali model follow..  13  112............................RYPDRVLLLITDMCSMYCRHCTRRRFAGQSDDSMPMERIDKAIDYIRNTPQVRDVLLSGGDALLVSD-ETLEYIIAKLREIPHVEIVRIGSRTPVVQRITPELVNMLKKYHPVWLNT-------HFNHPNEITESTRACQLLADAGVPLGNQSVLLRGVNDCVMKELVNKLVKIRVRPYYIQCDLSLGLEHFRTPVSKGIEIIEGLRGHTSGYCV-------PTFVVDAPGGGGKTPVMP................................................................................. 342
27 -13.3005l7j_A mol:protein length:459 ELP3 family  ali model follow..  14  17...................................MTKPLPCPGKCIYCESPAVLRAKSCEYQAYKQVALRLRIIQDMGKVELIIMGGTFLSITYQYGFIKDCINETAQHRCVGLCIETRDICGKAEIQRMIDFGTTRVELGVQMLDDDIYKLVERGHRVSDVAEATCLLREYGLKVHYHWMPLPGSSPEKDLALSRVFEDPRFCPDGLKLYPT....................................................................................................................................... 233
28 -13.3003rf9_A mol:protein length:404 Ribosomal RNA large subunit methyltransferase N  ali model follow..  16  117.................................LCVSSQVGCALECKFCSTAQQGFNRNGQVWRAAKIVGAAKVTGQRPITNVVMMGGEPLL--NLNNVVPAMEIMLDDFGFRRVTLSTSG--VVPALDKLGDMIDVALAISLHAPNDEEIVPINKKYNIETFLAAVRRYLEKS-RVTIEYVMLDHVNDEHAHQLAELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTI-----------------------VRKTRGDDIDAACGQLA................................................................... 359
29 -12.6005l7l_A mol:protein length:446 ELP3 family, ELP3 family  ali model follow..  14  17...................................MTKPLPCPGKCIYCESPAVLRAKSCEYQAYKQVALRLRIIQDMGKVELIIMGGTFLSITYQYGFIKDCINETAQHRCVGLCIETRDICGKAEIQRMIDFGTTRVELGVQMLDDDIYKLVERGHRVSDVAEATCLLREYGLKVHYHWMPLPGSSPEKDLALSRVFEDPRFCPDGLKLYPT....................................................................................................................................... 233
30 -11.0006fd2_B mol:protein length:457 Putative apramycin biosynthetic oxidoreductase 4  ali model follow..  12  193............................ARTGITSINGSFGCPYPCRFYCPYPLSEGRKIRTYPVERIVAEFRQCAELGITAAVFRDPVSFHRDRTLELCQAL--KAADTGVPWWCETRIDRLDEEVVAALVDAGCVGVEVGVESGDPDQATAVRKRLNLDTVRKFHAVARKAGLKLVFLFLILPRETRMSIRRTFDFILELGLADTEFNLTPYPGTELHQ................................................................................................................................ 389
31 -10.7004jc0_A mol:protein length:438 Ribosomal protein S12 methylthiotransferase RimO  ali model follow..  12  142...................................VKISDGCDRGCTFCSIPSFKGSLRSR--SIEDITREVEDLLKEGKKEIILVAGIDL-KQALPDLLRRLNSLNGEFWIRVMYLHPDHLT-EEIISAMLELDVKYFDVPVQHGSDKILKLMGRTKSSEELKKMLSSIRERFPDAVLRTSIIVGFTEEDFEELKQFVEEIQFDLGAFVYSDEEGTVAFNLKEKVDPEMAKRRQEELLLLQA.......................................................................................................... 359
32 -10.5004fhc_A mol:protein length:368 Spore photoproduct lyase  ali model follow..  101...............................AEYAIPLATGCMGHCHYCYLQTTLGSKPYIRVYVDIFAQAQKYINERAPEITRFEAADIVGIDHLTHSLKKAIEFIGATDYGRLRFVTKYEHVDHLLDARHNG---KTRFRFSINSRYVINHFEGTSSFDGRLAAARKVAGAGYKLGFVV-IYRHEGWERFQELARQLEGMDLSDLTFELIQH....................................................................................................................................... 293
33 -9.9105ul2_A mol:protein length:744 OxsB protein  ali model follow..  13  294......................ILGEISKFRGALTLETSRGCDYRCTFCPRDLRSWRPLSVEQTLKQLDDILRAGKHFNIKP-EFIGELPTEAQRIIDICEGLLKRERADSVYEPKRTKEWNVERKMWHYCALAGADRIFIGVESGSNQQLKRYGKGTTSEQNIIALRLVSALGINLRIGFIMFDMKGLDNLKENLDFLERTDALMKPIDIGDMTYEELYDK............................................................................................................................... 516

FFAS is supported by the NIH grant R01-GM087218-01
1 3 7 5 6 4   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Robinson-Rechavi M, Godzik A. Structural Genomics of Thermotoga maritima Proteins Shows that Contact Order Is a Major Determinant of Protein Thermostability. Structure (Camb). 2005 Jun;13(6):857-60.