current user: public |
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Query: ACL93469.1, from C.crescentus |
. 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . 170 . 180 . 190 . | |||||||
# | Score | Template | Links and tools | %id | First | MSLTPVTLASQSSARQMILKNAGVAFEAVSPGVDEDAAKAGLLAEDVTPRDIADALAEMKAVKVSTKRPGLVIGADQTLDLKGRLIDKAGSLDEARARLLELRGTTHKLHSAVVVARDGRPIWRIVESAKLSVRPFSDAWLDRYIERRGEALLWSVGCYELESEGVQLFDKIEGDYFTILGLPLVGLLDFLRLHGALTV | Last |
1 | -83.400 | PF02545.14; D7DNK7_METV0/10-194; Maf-like protein | ali follow.. | 26 | 1 | .....VYLASRSPRRVELLSQLGVACEPLPADIDETQFA------GESPEKYVTRLAREKAQACLQRKAHPVLAADTTVVLDGIVLGKPDDDIDARNMLIALSGSLHEVHTAVALAFNNQID-VVLSTTVVEMMTLTEEQIERYITSG--EPRDKAGSYGIQGKAGAWIKRIEGSYSGVMGLPVFETAELLRK...... | 184 |
2 | -7.180 | PF01725.16; G3JD96_CORMM/6-180; Ham1 family | ali follow.. | 9 | 2 | .......FITGNSNKLREVKAIEIEVRSLPIDLEEV-------------QGSMEEVTRSKCQRAADIVDGPVLVEDTALCFNAKWFLSAIGLEGLNNLLAAYSDKSADAVCTFGYSEGRGT.............................................................................. | 114 |
3 | -6.660 | PF06952.11; A6TIS0_KLEP7/1-237; PsiA protein | ali follow.. | 13 | 1 | MIHSSRSLVTLQPARQAALQAI--------MTVEDARQRGARLPSMPHVRTFLRLLTGSGRINNEVNLKQVEEALDVLIASNGEYCPLPLSQDVQSELFPEVRHARGE-REARKVEQSWLLRQNLLGQAVTELNFQSPETVNSWYRRWSDEFDASELEPAFWRWQTRFTSLRDLRWLLCAHAPLYEVMHEIR....... | 214 |
4 | -6.470 | PF10050.9; R5TMS6_9FIRM/20-177; Predicted metal-binding protein (DUF2284 topsan) | ali follow.. | 5 | 2 | .......................................................................ALNVEALEFLPNRNWSCPPGCGTLEEIAERVKPYTRGILVQSIGQLEDEFDVETMMETEHTQKARFAQLVEYVRSKEPDCIPMAAGAPSMEAYGLFVSKVCIQ-----SGMKYNYGKNTIAYSSCI.. | 157 |
5 | -6.250 | PF01755.17; Q9ZFP8_HISSO/1-183; Glycosyltransferase family 25 (LPS biosynthesis protein) | ali follow.. | 12 | 1 | MFNYVISLKSAVDRRQHIFSQQHIPYTFFDA-FQLNEENKHILQHNLANKLKSCFMSHVLLKCVDENLPFIAIFEDDIFL-----------SSVANKFLSEYDWLKERLAFNQYFILRLETIYMKSEYCKTKIPDYQNRKFNRLMSGH-------MGGYILSQVAAKKL-----ALFKNTDIFIEEIDQII........ | 183 |
6 | -6.120 | PF14702.6; W1QEP6_OGAPD/714-954; Central domain of human glycogen debranching enzyme | ali follow.. | 12 | 39 | ...........TVHRTNAKTGKGYFLIARTKFYQDSDQSLAPIVLSGTKVEHLFAYTLVRTGEDPVYKEGYMKSVPVRLQEIGPIEVETRGQDSLIKLPSNFPQGSIAVLSTTIPGCDYQLDRFVRSGALEAAKNLTLLDINAILYRCESEERDASGNYDVPGYGHLVYAGIQGWISVLLAHPLADHLR.......... | 228 |
7 | -5.810 | PF00233.19; B7Q413_IXOSC/244-479; 3`5`-cyclic nucleotide phosphodiesterase | ali follow.. | 6 | 31 | LEGLSLFVACNNSFQLTSKSILASLYSSEGSVMERHHFAQAMAILNTDGCNIFENLSRQEYTDCLDQMRDVILATDLAHHFR-------EELKTMVQEGYDVSNRKHHQLLTSMLVTCCD--LSDQTKDWRSSKKIAELIYNEFFSQGDLEKAMGVKPSEMMDREKACIPELQINFIQTIVKPIFDLLAEM........ | 224 |
8 | -5.760 | PF01991.18; VATE_SCHPO/18-217; ATP synthase (E/31 kDa) subunit | ali follow.. | 9 | 1 | .....FIKQEALEKAKEIHTLSEEEFQVEKAKIVREQCDAIDQTYDMKLKRASMAQKIAKSNVLNKSRLEILNSKQKVI---DDIF------SRVEKKLDGIEQKKDAYTKFMADLIVQAMELLGEPVGIVYSRQRDAEIVKAAIPKATEVLKSKNGSIDYE-LGGVVLVGLGGK........................ | 173 |
9 | -5.630 | PF06144.13; Q8E0E6_STRA5/20-192; DNA polymerase III, delta subunit | ali follow.. | 9 | 1 | .....VLAGEDLGQYAQMKEKL-------FQVIGFNKDDLAYSYFDLSEEDYQNAELDLESLPFLSDYKVVIFDQFQDITTDKKTYLDEQAMKRFEAYLQNPVDTTRLVICAPGKLDGKRRLVKLLKRDALEANTLKESDLKTYFQK------------YAHQEGLVFEAGVFDELLIKSNYDFSDTLTNIAFL..... | 172 |
10 | -5.330 | PF07677.14; E2AC15_CAMFO/1353-1442; A-macroglobulin receptor binding domain | ali follow.. | 13 | 3 | MAVLEVGMISGYIPDRTSLHSLLEDPATKVKRFEEDRDVVTIYFDKLINQKTCISFMVTRENVVDRLEPANVKLYD........................................................................................................................... | 78 |
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9. Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018. Pawlowski K, Pio F, Chu Z, Reed JC, Godzik A. PAAD - a new protein domain associated with apoptosis, cancer and autoimmune diseases. Trends Biochem Sci. 2001 Feb;26(2):85-7. |