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Query: ACL93470.1, from C.crescentus

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MTNAITGAAIVGGVCGQPIKHSMSPVIHNAWIAAAGLDAAYVPFAPAADRFETFVDGLRGGAVRGLNVTIPFKERALAVADTASDLARMAGAANLLVFNEDGSVHADNTDGPGLLGAIAIQAPGFDVTAAPVVILGAGGAARGAVAALLLAGAPRIAVVNRTVARAQDLADTFGEKVVAKGEDALPALLPEAGLIINATSLGLGGGAGPSADLTLTPKTAVVMDMVYKPLRTEFLRRAEAAGRRTVDGLEMLLRQAIPTFETIYGQAPSPKIDVRVLALKLLGEVLast
1 -41.600PF08501.11; ARO1_EMENI/1294-1374; Shikimate dehydrogenase substrate binding domain  ali follow..  29  1.............IFGSPISQSRSPALHNTLFAQVGLPHNYTRLET--TNAQDVQEFIRSPDFGGASVTIPLKLDIMPLLDEVAAEAEIIGAVNTI............................................................................................................................................................................................. 81
2 -18.100PF01488.20; HEM1_PSEAE/169-304; Shikimate / quinate 5-dehydrogenase  ali follow..  25  9.............................................................................................................................DLHRSQALLIGAGETITLVARHLFEQGVKRIVVANRTLERASLLAEQFGAH--AVLLSEIPEELANSDIVISSTASQLGKGAVERALKQRKHKPMFMVDIAVPRDIEPEVGELDDVYLYSVDDLHEV................................. 136
3 -11.600PF03435.18; Q94BZ0_ARATH/41-165; Saccharopine dehydrogenase NADP binding domain  ali follow..  18  1...................................................................................................................................VLVLGGTGVGGSTATALSKLCPEKIVVGGRNREKGEAMVAKLGENSEFSQVDMLETSLRDVDLVVHAAG--FQQAPRCTVLEAAIKTKTAYLDVCYAFRAKSLEAEAIAANIPAL....................................... 125
4 -10.900PF10727.9; Q743Y6_MYCPA/8-128; Rossmann-like domain  ali follow..  16  6..................................................................................................................................KVGIISAGRVGTALGVALERADHVVVACSAISHASRQRAQRRLPDTP----VATPPEVAAGAELLLLAVPDSELAGLVSGLAATEAVRAGTIVAHTSGANGVGILAPLTRQGCIP........................................ 116
5 -9.280PF03446.15; Q8FTI1_COREF/15-184; NAD binding domain of 6-phosphogluconate dehydrogenase  ali follow..  12  1..................................................................................................................................QIGVVGLAVMGSNLARNFARNG--TVAVYNRSTDKTDKLISDYATDGNFIPTKTVEDFVAALERAIVMVQAGAATDAVINQLADAMEEGDIIIDGALYTDTVCREKEMAARGRHFVGGISGGEEGALNGPSIMPGGPKESWEALGPLLESIAAKV 160
6 -9.230PF02423.15; Q2YIG4_BRUA2/15-320; Ornithine cyclodeaminase/mu-crystallin family  ali follow..  9  75.....................................................................LQTVTAFGVLADVGSGYPMLLTEMTILTALRTAATSAVAAKHLA------------PKNARTMAIIGNGAQSEFQALAFKALGVDKLRLYDLDPQATAKCIRNLQGAFNIVACKSVEEAVEGADIITTVTAVGGDCSGKTELHGDILRRSDIFVE............................................................. 240
7 -9.150PF07991.12; ILVC_METAC/15-178; Acetohydroxy acid isomeroreductase, NADPH-binding domain  ali follow..  14  1..............................................................................................................................LKDKTIAIMGYGSQGHAHARNLHESGL-NVVVGLRKGSSSWAKAES-----DGLKVMTVEEAAKAADVIMILLP..................................................................................... 68
8 -8.360PF13241.6; Q2FTK6_METHJ/4-113; Putative NAD(P)-binding  ali follow..  20  3............................................................................................................................IDFTGKKVIIFGGGVIGARKA-RYFAYEADVLVYSRSFHPEFQEIPVRTEVCNLTGDLEILRNMIHDASLVIAATS..................................................................................... 77
9 -8.240PF00056.23; MDH_CHLAA/3-142; lactate/malate dehydrogenase, NAD binding domain  ali follow..  20  1.................................................................................................................................KKISIIGAGFVGSTTAHWLAAKELGDIVLLDFVEGVPQGKALDLYEASPIEGFDVRVADTANSDVIVVTSGAGMSREDLIKVNADITRA-NAVIIMVNNPLDAMTYLAAEVSG........................................... 132
10 -8.200PF00670.21; SAHH_DICDI/191-351; S-adenosyl-L-homocysteine hydrolase, NAD binding domain  ali follow..  15  6..............................................................................................................RESLIDGIK-RATDVMIAGKVAVVAGYGDVGKGCAQSLSKMGA-RVLVTEIDPINALQACMD------GYQIVTMETAAPLSNIFVTTTG---CRDIVRGEHFAVMKEDAIVCNIGHFDCEIDV................................................... 118
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Lukasz Jaroszewski, Zhanwen Li, S. Sri Krishna, Constantina Bakolitsa, John Wooley, Ashley M. Deacon, Ian A. Wilson, Adam Godzik, Exploration of Uncharted Regions of the Protein Universe. Plos Biology. 2009 Sep. 7(9):e1000205