current user: public

If you have questions about the server, please let us know.

Query: ACL93482.1, from C.crescentus

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180
# Score Template Links and tools%idFirst MSEALKPGGGIKPDLPFTPVRVAVLTITDTRDEASDTSGQILVERIKAAGHELGGRVVVRDDIEQIRAQVRSWIDSKTVDAIVTTGGTGLTGRDVTVEALEPLFDKKIDGFSVVFHLVSYASVGLSTLQSRATAGLIESVFVFCLPGSNGAVKDGWDKVIAAQLDSRHKPCNMVELMPRLLERLast
1 -25.000PF00994.24; CINAL_DESPS/4-169; Probable molybdopterin binding domain  ali follow..  25  2.......................IIAIGDESGRILNTTSSFAAKQLFEAGYEIYGMSTIGDTPEVIGEALKRSI--ERVDAVLVTGGLGSTDDDLTNEAVSRAFGLPTSIVRAHFAQITDAPVGQLEKLAWLPEGIYEDKPIFFLPGVPHQMKALMVEHVLPRLAT................. 166
2 -7.060PF06306.11; Q9LAK4_CAMJU/1-347; Beta-1,4-N-acetylgalactosaminyltransferase (CgtA)  ali follow..  42LPKKTLVQINKYNNEDLIKLNKAIIGEGHKGYFNYDEK-----SKDPKSPLNPWAFIRVKNEAITLKASLESILPAIQRGVIGYNDCT-----DGSEEIILEFCKQ-KYPYEIQIQNPKSEENKLYSYYNYVASFIPKDEWLIKIDVDHIYDAKKLYKSF....................... 197
3 -7.000PF14582.6; E4U4F7_OCEP5/1-237; Metallophosphoesterase, calcineurin superfamily  ali follow..  13  1.........................................MSATARKFTRKVLALARLEGQHDYLER-TVKLIPDLDVDALVLVG-------DLAGPGAKA---DDYRKAFKILGQAPVP--------------------SFYVPGP................................... 76
4 -6.770PF01058.22; Q31DZ5_HYDCU/551-699; NADH ubiquinone oxidoreductase, 20 Kd subunit  ali follow..  10...................................KTVNPTIDELILKFISLDYHELLMAASGPHSETRLDQLIEEQGDYILIVEGAVPLGMGGNGEALLKRVAQSAVMAVGSCAFDGGVVAAAPNPTGAVGVSEALGRDDIINLPGCPVNPINVVGTLL....................... 147
5 -6.740PF18011.1; G4N797_MAGO7/564-712; C-terminal domain found in long catalases  ali follow..  22  1.................KTLRVGVLASTGNVASLSQAA--DLKARFMGDGVAVA---VLGETQVEGVDVTYSQSDATVFDGIIIAAGAE.............................................................................................. 67
6 -6.500PF00149.28; MRE11_COPC7/23-270; Calcineurin-like phosphoesterase  ali follow..  16  1.....................IKILLATD------------------HIGYLERDPIRGQDSINTFREIL-QLAVKNEVDFILLAG-------DLFHENKPS--RDCLYQTLALLREYTLG----------------DKPIQVELLSDPDEGK.............................. 89
7 -6.360PF02502.18; R5PD76_9CLOT/3-141; Ribose/Galactose Isomerase  ali follow..  13  1.......................IAIGSDHGGYELKLE---VIKHLKDRGFEVTDYGC-SCDYPIYGKAVAEAIAAGKQDLGILICGTGIG---------MSMVANKVEGVRAAL----------SDCFSAQATREHNNANVLCMGARTIGPGLALMIVDKFVDTPFSNDERHVRRIKMF... 139
8 -6.320PF03167.19; Q5WES9_BACSK/24-201; Uracil DNA glycosylase superfamily  ali follow..  19  5..................NEEADVLFVGEAPGRDELRAGANLNGFLKEAGINREDIYITQKEIIAHAPLLDEMINQLDPKLIVTLGTIAL............................................................................................. 112
9 -6.180PF00781.24; Q84S01_ORYSJ/99-230; Diacylglycerol kinase catalytic domain  ali follow..  13  3.....................IVILNPNSGFRSSREVFYQKVQPTLELSGFMMQ---VETAYAGHAHALASTVDLSTCPDGIICVGGDGI-------------VNEVLNG-----------------LLGRDDLEEAIQLPIGIIPGSENSLVWTVLGIRDPVSAATTLAKGGITPI...... 127
10 -6.100PF18182.1; A0A0F3GNU5_9BACT/377-494; minimal CRISPR polymerase domain  ali follow..  10  7...................................DATGDYLETAFVMSGIDEEEVQMRSNILREAINKLKKLIKKTTKDSIIFAEGDNILFKSKFDNTLLNEIQSVYKKETGLSSSIGYGKTLRDVMIALRLAKAKNGESLVGI...................................... 118

FFAS is supported by the NIH grant R01-GM087218-01
1 3 7 5 6 4   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Robinson-Rechavi M, Godzik A. Structural Genomics of Thermotoga maritima Proteins Shows that Contact Order Is a Major Determinant of Protein Thermostability. Structure (Camb). 2005 Jun;13(6):857-60.