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Query: ACL93487.1, from C.crescentus

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70
# Score Template Links and tools%idFirst MKAGPDAEADALGDEEDIAMFVQALAGVNMDYRRVLSLLIPRLAALEERGDTAGAVRLIQEIQAIINAPERPEHLast
1 -7.150PF06134.11; RHAA_BACHD/1-417; L-rhamnose isomerase (RhaA)  ali follow..  15  331..............INRIAAWTIGTRNVIKALLFAMLIPHKQLKEWQETGDYTRRLAVLEEFKTY......... 381
2 -7.050PF17114.5; S9VWV7_SCHCR/61-205; Gef2-related medial cortical node protein Nod1  ali follow..  14  60.......DNSNLNHEFFLQQVKSNFLSLPKIKIKMLSVFFSIVQIVLSKGGSHERVQFFASIAAVILPK..... 123
3 -5.850PF03571.15; C4XVZ5_CLAL4/140-688; Peptidase family M49  ali follow..  8  440.........KHSEGTFDDLEIVVDESKLNKEAVDALAAFLHSLHVFKTTANVKEGLAFYNDMTEV......... 495
4 -5.840PF09543.10; Q1CVP2_MYXXD/3-120; Protein of unknown function (DUF2379 topsan)  ali follow..  17  46.........TALQTQAGATELLREAMRRIKDGSWRLMRALHRMYQHKRAGDFDSARQEMREVLAE......... 101
5 -5.770PF00611.23; Q75DE5_ASHGO/18-94; Fes/CIP4, and EFC/F-BAR homology domain  ali follow..  18  17...............KNMVTFFEERSKLEKDYSRKLGAIANRLEQQLESTPDYGNMQKCAELCRAEQSKLAQSH 75
6 -5.660PF18822.1; V6ART6_9ARCH/84-206; CdvA-like coiled-coil domain  ali follow..  19  11......SENDEMREDAEIIKYKSKLLSLEEAEKDISTRLSARLEALNEQLKSVKVLLFDAKVQ........... 69
7 -5.550PF12931.7; U1HK14_ENDPU/1170-1475; Sec23-binding domain of Sec16  ali follow..  17  195................EVYEFASSVLASNSRSALMPHLQAYKLQSLAEAGFKTEAQAYCDAIGASLRSTTKLS. 254
8 -5.410PF01158.18; A7ATP0_BABBO/13-113; Ribosomal protein L36e  ali follow..  14  39.................VSEVIREVCGFAPYERHMIELIKTGSASAQKRGTLRRAKTKNDEMMRVVELQRK... 101
9 -5.300PF11349.8; C6WR17_ACTMD/8-134; Protein of unknown function (DUF3151 topsan)  ali follow..  17  86..............................PNQGFLRSLAALSRAAGGIGEVAEQDRCAKFLADS......... 120
10 -5.300PF13481.6; B2JV40_PARP8/220-401; AAA domain  ali follow..  14  110...........LLDPRDTDDLCEAIETCGITGGVVFIDPFALATIGLEENSSADMGRAGAALNTL......... 163
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 9 4 0   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Jaroszewski L, Godzik A. Tolerating some redundancy significantly speeds up clustering of large protein databases. Bioinformatics. 2002 Jan;18(1):77-82.