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Query: ACL93470.1, from C.crescentus

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MTNAITGAAIVGGVCGQPIKHSMSPVIHNAWIAAAGLDAAYVPFAPAADRFETFVDGLRGGAVRGLNVTIPFKERALAVADTASDLARMAGAANLLVFNEDGSVHADNTDGPGLLGAIAIQAPGFDVTAAPVVILGAGGAARGAVAALLLAGAPRIAVVNRTVARAQDLADTFGEKVVAKGEDALPALLPEAGLIINATSLGLGGGAGPSADLTLTPKTAVVMDMVYKPLRTEFLRRAEAAGRRTVDGLEMLLRQAIPTFETIYGQAPSPKIDVRVLALKLLGEVLast
1 -62.500d2egga2 c.2.1.7 (A:123-297) Shikimate 5-dehydrogenase AroE {Geobacillus kaustophilus [TaxId: 1462]}  ali model 3D-neighbors follow..  30  1.............................................................................................................DGLGYVQALEEEM-NITLDGKRILVIGAGGGARGIYFSLLSTAAERIDMANRTVEKAERLVREGDERSAYFSLAEAETRLAEYDIIINTTSVGMHPREVQPLSLERLRPGVIVSDIIYNPLETKWLKEAKARGARVQNGVGMLVYQGALAFEKWTGQWPDVNRMKQLVIEALRR.. 175
2 -59.400d3dona2 c.2.1.7 (A:100-269) Shikimate 5-dehydrogenase AroE {Staphylococcus epidermidis [TaxId: 176279]}  ali model 3D-neighbors follow..  28  1.............................................................................................................DGIGYVNGLKQI--YEGIEDAYILILGAGGASKGIANELYKIVRPTLTVANRTMSRFNNWSLNIN----KINLSHAESHLDEFDIIINTTPAGMNGNTDSVISLNRLASHTLVSDIVYNPYKTPILIEAEQRGNPIYNGLDMFVHQGAESFKIWTNLEPDIKAMKNIVIQKLKGEL 170
3 -58.900d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  32  1.............................................................................................................DGVGLLSDLERL--SFIRPGLRILLIGAGGASRGVLLPLLSLDC-AVTITNRTVSRAEELAKLFAHTGSIQALSMDELEGHEFDLIINATSSGISGDI-PAIPSSLIHPGIYCYDMFYQKGKTPFLAWCEQRGSKNADGLGMLVAQAAHAFLLWHGVLPDVEPVIKQLQEELS... 170
4 -58.500d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}  ali model 3D-neighbors follow..  26  1.............................................................................................................DYIAIVKLIEK---YHLNKNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAYIN------SLENQQADILVNVTSIGMKGGKELAFPKAFIDNASVAFDVVAMPVETPFIRYAQARGKQTISGAAVIVLQAVEQFELYTHQRPSDELIAEAAAFART... 167
5 -57.100d3tnla2 c.2.1.0 (A:113-291) automated matches {Listeria monocytogenes [TaxId: 169963]}  ali model 3D-neighbors follow..  27  1.............................................................................................................DGTGYMRALKEA--GHDIIGKKMTICGAGGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKLFDIEDHEQLRKEIAESVIFTNATGVGMKPGETLLPSADMLRPELIVSDVVYKPTKTRLLEIAEEQGCQTLNGLGMMLWQGAKAFEIWTHKEMPVDYIKEILF....... 179
6 -56.400d2hk8a2 c.2.1.7 (A:106-266) Shikimate 5-dehydrogenase AroE {Aquifex aeolicus [TaxId: 63363]}  ali model 3D-neighbors follow..  31  1.............................................................................................................DWIGFLKSLKSL--IPEVKEKSILVLGAGGASRAVIYALVKEGA-KVFLWNRTKEKAIKLAQKFPLEV----VNSPEEVIDKVQVIVNTTSVGLKDEDPEIFNYDLIKKDHVVVDIIYKE--TKLLKKAKEKGAKLLDGLPMLLWQGIEAFKIWNGCEVPYSVAERSVRD...... 161
7 -55.300d5dzsa2 c.2.1.0 (A:101-269) automated matches {Peptoclostridium difficile [TaxId: 272563]}  ali model 3D-neighbors follow..  26  1.............................................................................................................DYFGLDSMFKMA--NIDVQGKVAVILGTGGASKAALTYFIDSGIEKLYVSTRKKDDKKLLNSKAIL------IDYEELKHIKGDIILNATPVGMYPNGISPVSKSIIQNFDILIDLIYNPGETEFLRIGNSMGKKTCDGLYMLVGQAIKSQEIWQDTKIDNSILDVIY-NELKLEF 168
8 -54.300d3tnla1 c.58.1.0 (A:4-112) automated matches {Listeria monocytogenes [TaxId: 169963]}  ali model 3D-neighbors follow..  36  2ITERITGHTELIGLIATPIRHSLSPTMHNEAFAKLGLDYVYLAFEVGDKELKDVVQGFRAMNLRGWNVSMPNKTNIHKYLDKLSPAAELVGAVNTVV-NDDGVLTGHIT................................................................................................................................................................................ 109
9 -53.700d1nyta2 c.58.1.5 (A:1-101) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  36  2.........ETYAVFGNPIAHSKSPFIHQQFAQQLNIEHPYGRVLAPINDFINTLNAFFSAGGKGANVTVPFKEEAFARADELTERAALAGAVNTLMRLEDGRLLGDNT................................................................................................................................................................................ 101
10 -50.500d3phha2 c.2.1.0 (A:105-263) automated matches {Helicobacter pylori [TaxId: 85962]}  ali model 3D-neighbors follow..  23  1.............................................................................................................DALGFYLSLK------QKNYQNALILGAGGSAKALACELKKQGL-QVSVLNRSSRGLDFFQR-------LGCDCFMEPPKSAFDLIINATSASLHNELPKEVLKGYFKEGKLAYDLAYGF-LTPFLSLAKELKTPFQDGKDMLIYQAALSFEKFSASQIPYSKAFEVMRSVF.... 159
11 -50.300d5dzsa1 c.58.1.0 (A:1-100) automated matches {Peptoclostridium difficile [TaxId: 272563]}  ali model 3D-neighbors follow..  27  2.........NFFGLVGEKLSHSVSPQIHKRVFEILNIESAYKNFEISKEDISKLDGAIKLLGIQGVNVTVPYKERIMKYLDFISPEAKRIGAVNTIL-LRENMLYGYNT................................................................................................................................................................................ 100
12 -44.600d1npya2 c.58.1.5 (A:1-102) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}  ali model 3D-neighbors follow..  27  2....INKDTQLMSLSGRP--SNFGTTFHNYLYDKLGLNFIYKAFTT--QDIEHAIKGVRALGIRGCAVSMPFKETCMPFLDEIHPSAQAIESVNTIV-NDNGFLRAYNT................................................................................................................................................................................ 102
13 -18.100d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Methanopyrus kandleri [TaxId: 2320]}  ali model 3D-neighbors follow..  21  21.............................................................................................................................SLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGE--AVRFDELVDHLARSDVVVSATAA--VDDVREALRKRDRRSPILIIDIANPRDVEEGVENIEDVEVRTIDDLRVIARENLER.......................... 156
14 -15.100d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Fungus (Magnaporthe grisea) [TaxId: 148305]}  ali model 3D-neighbors follow..  18  1...............................................................................................................................ATKSVLMLGSGFVTRPTLDVLTDSGI-KVTVACRTLESAKKLSAGVQHSLDVNDDAALDAEVAKHDLVISLIP----YTFHATVIKSAIRQKKHVVTTSYVSPAMMELQAAKDAGITVMNEIGX.................................. 124
15 -12.200d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}  ali model 3D-neighbors follow..  21  1.........................................................................................................GSNTTAAAGVALVVKAA-GGSVKGKKAVVLAGGPVGMRSAALLAGEGA-EVVLCGRKLDKAQAAADSVNKRAETADDASRAEAVKGAHFVFTAGAIGL.................................................................................. 104
16 -11.700d1xc2a3 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}  ali model 3D-neighbors follow..  15  2..................................................................................................................................NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELG-----VETSATLPELHSDDVLI----LAVKPQDMEAACKNIRTNGALVLSVAAGLSVGTLSRYLGGT-VRVMPNTPGKIGLGVSGMYAEAEVSETDRRIADRIMKSV.... 145
17 -10.300d3tria1 c.2.1.0 (A:2-162) automated matches {Coxiella burnetii [TaxId: 777]}  ali model 3D-neighbors follow..  13  1...............................................................................................................................NTSNITFIGGGNMARNIVVGLIANGYNRICVTNRSLDKLDFFKEKCGVHTT----QDNRQGALNADVVVLAVKPHQIKMVCEELKDILSETKILVISLAVGVTTPLIEKWLGKA-VRAMPNTPSSVRAGATGLFANETVDKDQKNLAESIMRAV.... 154
18 -9.950d4ypoa1 c.2.1.0 (A:1-180) automated matches {Mycobacterium tuberculosis [TaxId: 1773]}  ali model 3D-neighbors follow..  12..............................................................................................................................IQGRKVGVIGYGSQGHAHSLSLRDSGV-QVRVGLKQGSRSRPKVEE-----QGLDVDTPAEVAKWADVVMVLAPDTAQAEIFAGDIEPNLKPGDALFFG............................................................ 104
19 -9.410d2x5oa1 c.5.1.0 (A:1-93) automated matches {Escherichia coli [TaxId: 668369]}  ali model 3D-neighbors follow..  25  2.............................................................................................................................DYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRM---TPPGLDKLPEAVERHTGSLNDEWLMAADLIVASPGI---------------------------ALAHPSLSAAADAGIEIVG...................................... 93
20 -9.340d5bsea1 c.2.1.0 (A:3-169) automated matches {Medicago truncatula [TaxId: 3880]}  ali model 3D-neighbors follow..  10  4............................................................................................................................IPADSYTLGFIGAGKMAESIAKGAVRSGVSRIKTAIHSNPARRTAFESIGITVL----SSNDDVVRDSNVVVFSVKPQLLKDVVLKLKPLLTKDKLLVSVAAGIKMKDLQEWAGHERFIRVMPNTAATVGEAASVMSLGGAATEEDANLISQLFGSI.... 159
21 -9.230d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}  ali model 3D-neighbors follow..  13  2...............................................................................................................................PKAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVDDLAGADVVIVTAGFGKSDKEWNRDDLLPLNNKIMFIIVVTNPVDVQLLHQHSGVPKNKIIGLG................................... 150
22 -9.170d5jo9a_ c.2.1.0 (A:) automated matches {Bradyrhizobium japonicum [TaxId: 375]}  ali model 3D-neighbors follow..  14  1.............................................................................................................................ELEGKVAAVTGAAGIGLASAEAMLAAGA-RVVMVDRDEAALKALCNKHGDTVIPLVVDRVLEKACQLDILHANAGTYVGGDLVDADTMAIDRMLNLNVNVVMKNVHDVLPHMIERRTGDIIVTSSLAAHFPTPWEPVYASSKWAINCFVQTVRRQVFKH. 171
23 -9.140d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}  ali model 3D-neighbors follow..  13  2..................................................................................................................................KIGIIGVGKMASAIIKGLKQTP-HELIISGSSLERSKEIAEQLALPYA----MSHQDLIDQVDLVI----LGIKPQLFETV-LKPLHFKQPIISMAAGISLQRLATFVGQD-LRIMPNMNAQILQSSTALTGNALVSQELQARVRDLTDSF.... 144
24 -9.100d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}  ali model 3D-neighbors follow..  10  78.....................................................................LPTVMALMILNSPETGFPLAVMDATYTTSLRTGAAGGIAAKYLA------------RKNSSVFGFIGCGTQAYFQLEALRRFDIGEVKAYDVREKAAKKFVSYCE-DRGISASVQPAEEASRCDVLVTTTPIGADGPGKQELDVEILKKAKIVVDDLEQAKHGGEINVAVSKGVIGVEDVHATIGEVIAG.......................... 274

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Wooley JC, Godzik A. Probing metagenomics by rapid cluster analysis of very large datasets. PLoS ONE. 2008;3(10):e3375. Epub 2008 Oct 10.