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Query: ACL93474.1, from C.crescentus

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKVRPMANNPGAKKAIRKIARRTEVNTARRSRVRTFLRKFEDAIAKGDVAVAKAAFVEAQSELMRAVSKGVVHPNTGSRKVSRLAARLKKLDKAAALast
1 -48.500d1fjgt_ a.7.6.1 (T:) Ribosomal protein S20 {Thermus thermophilus [TaxId: 274]}  ali model 3D-neighbors follow..  26  1.......RNLSALKRHRQSLKRRLRNKAKKSAIKTLSKKAVQLAQEGKAEEALKIMRKAESLIDKAAKGSTLHKNAAARRKSRLMRKVRQLLEAAG 89
2 -48.300d2qalt1 a.7.6.1 (T:2-86) Ribosomal protein S20 {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  37  1.......NIKSAKKRAIQSEKARKHNASRRSMMRTFIKKVYAAIEAGDKAAAQKAFNEMQPIVDRQAAKGLIHKNKAARHKANLTAQINKLA.... 85
3 -7.740d1j5wa_ d.104.1.1 (A:) Glycyl-tRNA synthetase (GlyRS) alpha chain {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  11  207..........................GLLFRHFDEYEKEFYRLVEKNLYLPAYDYILKCSHTFNLLDARGAISVSQRQTYVKRIQAMARKAAR... 273
4 -7.370d2oo2a1 a.8.11.1 (A:2-75) Hypothetical protein AF1782 {Archaeoglobus fulgidus [TaxId: 2234]}  ali model 3D-neighbors follow..  15  1.EEELRRETLKWLERIEERVKEIEGDEGFMRNIEAYISDSRYFLEKGDLVRAFECVVWAWAWLEIGLEVGKLH....................... 72
5 -7.050d2z76a_ d.17.4.3 (A:) Hypothetical protein Rv0760c {Mycobacterium tuberculosis H37Rv [TaxId: 83332]}  ali model 3D-neighbors follow..  9  1.............................QSPALIASQSSWRCVQAHDREGWLALMADDVVIEDPIGKSVTNPDGSGIKGKEAVGAFFDTHIAA.. 65
6 -6.010d2f5tx2 d.136.1.5 (X:110-246) Transcriptional regulator TrmB {Thermococcus litoralis [TaxId: 2265]}  ali model 3D-neighbors follow..  12  6..............................RSFDEAIEMFRESLYSAKNETPSEFFETIREDLIKTLERGV......................... 50
7 -5.920d3bb9a1 d.17.4.16 (A:27-147) Uncharacterized protein Sfri1973 {Shewanella frigidimarina [TaxId: 56812]}  ali model 3D-neighbors follow..  13  1............................VDSAAGNVVKQFHAALQMGNEAIVRQSLAANVQIYE................................ 36
8 -5.670d2odma_ a.23.6.0 (A:) automated matches {Staphylococcus aureus [TaxId: 196620]}  ali model 3D-neighbors follow..  30  38................................................EEVLDTQMFGLQKEVDFAVKLGLVDREDGKQIMLRLEKELSKLHEA.. 83
9 -5.540d4fzoa1 a.8.11.1 (A:2-77) automated matches {Methanothermobacter thermautotrophicus [TaxId: 187420]}  ali model 3D-neighbors follow..  7  10.....LEDLEKELMEMKSIKLSDDEEAVVER-ALNYRDDSVYYLEKGDHITSFGCITYAEGLTDSLRMLHRI........................ 75
10 -5.420d2vglm1 d.110.4.2 (M:1-141) Mu2 adaptin (clathrin coat assembly protein AP50) {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  11  82................................LYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGYPQNSETGALKTFITQ.......... 135
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 4 5 9   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Li W, Godzik A. In search for more accurate alignments in the twilight zone. Protein Sci. 2002 Jul;11(7):1702-13.