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Query: ACL93480.1, from C.crescentus

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MPRRLRPTRLEHVVDGHALRARLSAAALDSIGNEAEQRARAIDILKQALFRGRMIAKERLENGASGVETSRLLSGVTDEVITALYDFTTVHVFRARNPTEGERLCLLAVGGYGRGTLAPFSDIDLLFLRPYKQTPHAESVIEYMLYALWDLGFKVGHASRTIEECVRLSKEDFTIRTSILEARRLTGDERLAEDLKKRFRDEVMKATGAQFVAAKLKERDDRQARAGASRYMVEPNVKEGKGGLRDLHTLMWIAEYLHPVDRPEDVFKMEVFSIRETKAFIRAFDFLHAVRAHLHFTTGRPEERLTFDLQPEIARRMGYGDRGDAPAVERFMRRYFLIAKEVGTLTRAFSAKLEAEHFKNEPKGISRFLPGARPKRKALDVEGFYEDGGRLNIEGQEIFEADPVNLIRLFKIADERDLDLHPDAFTAVTRALPLITSRVRRDPDACRAFLDLLARGKRSYRTLTLMNDAGVLGRFIPEFGRVVAQMQFNMYHSYTVDEHTLRAVGVIGDIAAGRLVDDHPLAVSIMPLIEDREALFLAMLLHDTGKGGVGGQEKAGARSARSACERLGVERSKVELVAWLVENHLVMSDFAQKRDVSDPGTVAAFARIVENPERLRLLLVITVADIRAVGPGVWNGWKGQLLRELYNATEAVFRGGRGSDAAANVQRHQESTAEAARAALLETDPAAKGWVAAMENAYFSAFSQDDLFHHAELARRAAIQGGAAAEGQVRPGSNAAEVVIAAKDRRGLFADLALAISSLGGNVVGARVFTSRQGQALDVFYVQDVTGAPFGCENPRALRRLADALEAAGKGDALAVEPRRGSEQTRAAAFAIAPSVTIDNDASNDATVVEASGRDRPGLLHALAKTLADSALSIQSAHIDGYGERAVDAFYVQTTEGGKVTDTRKLNALKADLLAALEQNEASAPAARPGLRRARASVARLast
1 -17.800d5dqva_ a.211.1.0 (A:) automated matches {Bacillus subtilis [TaxId: 1423]}  ali model 3D-neighbors follow..  11  1.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................MTELKQADQIRTWVQSV--LTGESSGHDW---LHISRVADLAVYIGEKENAD--------------LFIVETAALVHDLIDVKLPDTIRLSVSEVYNQLVTFGIGKEDADRVIHIITKMSFRDREKLEG---EPLSIE--GKVVQDADRLDAIGAVGIARAFMFAGAKGHGLYGDDQSAYAHFFHKLLRLIDMMNTDTARELAEERHEFMLQYIRQLEKD............................................................................................................................................................................................................................................................... 196
2 -17.500d1vfga1 a.173.1.1 (A:137-351) Poly A polymerase PcnB {Aquifex aeolicus [TaxId: 63363]}  ali model 3D-neighbors follow..  15  2......................................................................................................................................................................................................................................................................................................................................................................................................IRVLHPVSFIEDPVRILRALRFAGRLNFKLSRSTEKLLKQAVNLGLLKEAPRGRLINEIKLALRED-RFLEILELYRKYRVLEEIIEGFQWNEKVLQKLYALRKVVDWHALEFSE----------------------ERIDYGWLYLLILISNLDY-----------ERGKHFLEEMSAPSWVRETYKFMKFKLGSLKEE-----LKKAKENYEVYRLLKPLHTSVLLLLMLEEELKEKIKLYLEKLRK............................................................................................................................................................................................................................................................................................................. 211
3 -16.900d3b57a1 a.211.1.1 (A:1-201) Uncharacterized protein Lin1889 {Listeria innocua [TaxId: 1642]}  ali model 3D-neighbors follow..  15  1.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................MNKEEIILSAKNWMHSH--FENETTGHDW---SHIKRVWKLSKEIQSKEGGD--------------LFTIELAALFHDYSDIKLTTDEQEATKTLINWMETKEIPSELIKKIIRIIQSV------SFKKGKNTFKALTIEEKIVQDADRLDAIGAIGIARTFTYG...................................................................................................................................................................................................................................................................................................................... 140
4 -15.700d2qgsa1 a.211.1.1 (A:1-216) Uncharacterized protein SE1688 {Staphylococcus epidermidis [TaxId: 1282]}  ali model 3D-neighbors follow..  17  1.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................MNSRMKIKKAYEYMKSF--HQHDTTGHDI---AHVERVYNNACYIAKRE-------------NITDTLVIELSSLLHDTVDSK--TDEILAYDQLKQFLSTLDLSSEISQQVLYIIKHM------SYRAGKNNHVKLSIDGEIVRDADRLDAIGAIGIARTFQFS...................................................................................................................................................................................................................................................................................................................... 140
5 -15.500d1v4aa1 a.24.16.4 (A:287-437) Glutamine synthase adenylyltransferase GlnE, domain 2 {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  14  29...........................................................................................................................................................................................................................................NIKLGAGGIREIEFIVQVFQLIRGLPTLSAIAELHLLSENDAEQLRVAYLFLRRLENLLQSINDEQTQTLPSDNRARLAWAMDFAD------WPQLTGALTAHMTNVRRVFNELI.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 150
6 -15.100d2pq7a1 a.211.1.1 (A:1-217) Predicted hydrolase mes0020 {Uncultured thermotogales bacterium [TaxId: 221214]}  ali model 3D-neighbors follow..  15  2............................................................................................................................................................................................................................................................................................................................................................................................................................................................................NLTELMERIPHLRE-ILNIVREAFKDYDDPAHDI---SHTFRVMENASEIASREK---------------DLQKAIIAALLHDIKRPHGVDHAESGAEYASGLLPTMGFDISFVAEVSKAIRSH------------GGLTPTSLTGKILQDADRLDAIGAVAIARVFSYSGKTGTPLHSLQFSPRSSYSGNSRSSINHFHEKILKIRPETFWTETARKMAEDRYSFVVEFVQRFLAEW.................................................................................................................................................................................................................................................. 216
7 -15.000d1v4aa2 d.218.1.9 (A:2-286) Glutamine synthase adenylyltransferase GlnE, N-terminal domain {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  17  46...IAHPEWLTELESQPPQADEWQHAWLQEALCNVSDEAGLMRELRLFRRRIMVRIAWAQTLALTEESILQQLSYLAETLIVAARDWLYDACCRENAQGEAQPLLILGMGKLGGGELNFSSDIDLIFAWPEHGCTQFTRMGQRLIKVL-DMRLR-GPLVLSFAALEDYYQEQGRDRYAMVKARIMGDSEGVYANELRAMLRPFVFRR............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 285
8 -13.300d1knya2 d.218.1.1 (A:1-125) Kanamycin nucleotidyltransferase (KNTase), N-terminal domain {Staphylococcus aureus [TaxId: 1280]}  ali model 3D-neighbors follow..  12  10......................................................................EERMKIVHEIKERILDKYGDDV-----------KAIGVYGSLGRQTDGPYSDIEMMCVMSTEEAEFSHEWTTG--------EWKVEVNFYSEEILLDYASQ---THGQFFSILPIYDSGGYLEKVYQTAKS................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 125
9 -11.800d1ou5a1 a.173.1.1 (A:151-354) tRNA CCA-adding enzyme, C-terminal domains {Human (Homo sapiens), mitochondrial [TaxId: 9606]}  ali model 3D-neighbors follow..  10  9...........................................................................................................................................................................................................................................................................................................................................................................................................KQRIQEDYLRILRYFRFYGRIVDDHDPETLEAIAENAKGLAG---SGERIWVELKKILVGN-HVNHLIHLIYDLDVAPYIGLP---------------------------------ANASLEEFDKVSKNVDGFSPKPVTLLASLFKVQDD-------------VTKLDLRLKIAKEEKNLGLFIV--KNRKDLIKATDSSDPLKPYQDFIIDSREPDATTRVCELLKYQGEHCLLKEMQQWS.............................................................................................................................................................................................................................................................................................................. 203
10 -11.800d2pjqa1 a.211.1.1 (A:1-215) Uncharacterized protein LP2664 {Lactobacillus plantarum [TaxId: 1590]}  ali model 3D-neighbors follow..  12  1.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................MITETQLTAIQTYALQK--LAHDHSGHGR---DHLQRVNRLARRLAKDEGA--------------NLNLTLAAAWLHDVIDDKLMANPAKAHQDLIVQLNAQNVTADDQTAIFAIIDH------MSFSKSFNGPQKLSLEGQVVQDADRLDAIGAIGIARALYYS...................................................................................................................................................................................................................................................................................................................... 140
11 -10.800d1miwa1 a.173.1.1 (A:140-404) tRNA CCA-adding enzyme, C-terminal domains {Bacillus stearothermophilus [TaxId: 1422]}  ali model 3D-neighbors follow..  15  9...........................................................................................................................................................................................................................................................................................................................................................................................................EKRFREDALRMMRAVRFVSELGFALAPDTEQAIVQNAPLLAH---SVERMTMEMEKLLGGP-FAARALPLLAETGLNAYLPGLAG------KEKQLRLAAAYRWPWL----------------------------AAREERWALLCHALGV-----------QESRPFLRAWKLPNKVVDEAGAILTALLFSAGLERALSVETVRAAFTGAPPGPWHEKLRRRFIKTKGELAVNGKDVIEPWVKEALDAIWRAVVN................................................................................................................................................................................................................................................................................................. 240
12 -10.600d1u8sa1 d.58.18.5 (A:4-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}  ali model 3D-neighbors follow..  15  1...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TQHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLIS--------SPSNITRVETTL-PLLGQQHDLITMMKRTSPHDH..... 84
13 -10.500d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]}  ali model 3D-neighbors follow..  9  2..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................RGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYF----EIEGGDFEKILERVKTF........................ 67
14 -10.400d2gz4a1 a.211.1.1 (A:6-205) Hypothetical protein Atu1052 {Agrobacterium tumefaciens [TaxId: 358]}  ali model 3D-neighbors follow..  13  14.................................................................................................................................................................................................................................................................................................................................................................................................................................................................LDLLDPSPLDVEIADIAHGLARVARW-----------QTRGDHAFTVAQHCLIVETIFCRMCPGATPD-----------------EMQMALLHDAPEYVIGDYKTVEKRLEAAVHLRFGLPPHASRELKDRIKK-------------ADTVAAFFEATELAGFSTAEAQKFFGLPRGITRDMFDIIPLPSTEAQRLFIARFEAIETLRVTRTGG..................................................................................................................................................................................................................................................................................... 200
15 -10.300d1u6za1 a.211.1.5 (A:313-509) Exopolyphosphatase Ppx C-terminal domain {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  12  6.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TASSLANQYHIDSEQARRVLDTTMQMYEQWREQ------------QPKLAHPQLEALLRWAAMLHEVGLNINSGLHRHSAYILQN-SDLPGFNQEQQLMMATLVRYHRKAIKLDDLPRFTKKKQFLPLIQLLRLGVLLN.................................................................................................................................................................................................................................................................................................................................... 134
16 -10.000d1u8sa2 d.58.18.5 (A:88-180) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}  ali model 3D-neighbors follow..  13  1........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................QTHAYTVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSFHIA-----RVDSGCNLMQLQEEFDALCTA..................... 81
17 -9.550d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]}  ali model 3D-neighbors follow..  15  4...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................IITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVV------SSDEKQDFTYLRNEFEAFGQT..................... 69
18 -9.200d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}  ali model 3D-neighbors follow..  12  5...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................QLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGIVSDPD............................................ 53
19 -9.100d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}  ali model 3D-neighbors follow..  21  1...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................VVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRPSNMDCIEVLKEKKVDLLAASDLYKL....................... 71
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Jaroszewski L, Godzik A. Tolerating some redundancy significantly speeds up clustering of large protein databases. Bioinformatics. 2002 Jan;18(1):77-82.