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Query: ACL93487.1, from C.crescentus

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKAGPDAEADALGDEEDIAMFVQALAGVNMDYRRVLSLLIPRLAALEERGDTAGAVRLIQEIQAIINAPERPEHLast
1 -6.690d1d8wa_ c.1.15.2 (A:) L-rhamnose isomerase {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  22  322.......GLDFFDASINIAAWVIGTRNMKKALLRALLEPTAELRKLEAPGDYTARLALLEEQKSL......... 380
2 -5.980d3ku8a_ e.11.1.1 (A:) automated matches {Escherichia coli [TaxId: 83333]}  ali model 3D-neighbors follow..  23  94................................QAILDLRLQKLTGLEHLDEYKELLDQIAELLRILGSADR... 135
3 -5.880d3vzha1 d.58.53.2 (A:1-212) CRISPR-associated protein Cas5d {Streptococcus pyogenes serotype M1 [TaxId: 301447]}  ali model 3D-neighbors follow..  16  1MYRSRDFYVRVSGQ---RALFTNPATKGGSERRQALNGIVDAIYYKPTFTNIVTEVKVINQIQTE......... 69
4 -5.850d4jeaa_ a.24.3.1 (A:) Cytochrome b562 {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  16  54.............DSPEMHDFRHGFWI--------LIGQIHDALHLANCGKVKEAQAAAEQLKCT----CNACH 102
5 -5.630d1z21a1 a.243.1.2 (A:42-145) Yop proteins translocation protein H, YscH (IcrP) {Yersinia pestis [TaxId: 632]}  ali model 3D-neighbors follow..  13  42.......HQGSVVPAIDLPELRSVLQQFDSFGKRWEAILLQVLEGIKPNESQVGLPYLSELINKELM....... 101
6 -5.210d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  12  98.........................DKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYIL........ 138
7 -5.030d2uv4a1 d.37.1.0 (A:182-324) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  21  102.........................ETLETIINRLVEAEVHRLVVVDENDVVKGIVSLSDILQALV........ 142
8 -4.980d4f3mb_ d.58.53.2 (B:) CRISPR-associated protein Cas5d {Bacillus halodurans [TaxId: 272558]}  ali model 3D-neighbors follow..  16  12................DYALFTDPLTKIGGEKYQALKGIAESIYWKPTIVFVIDELRVMKPIQME......... 67
9 -4.930d1t4ba2 d.81.1.1 (A:134-354) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  18  87................................VPLAGSLIPWIDKQLDNGQSREEWKGQAETNKILNTSS.... 124
10 -4.930d1p5xa_ a.124.1.1 (A:) Bacterial phosholipase C {Bacillus cereus [TaxId: 1396]}  ali model 3D-neighbors follow..  11  94.......................................FKLAGESYKNKDMKQAFFYLGLSLHYLGDVNQPMH 128
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Jaroszewski L, Godzik A. Tolerating some redundancy significantly speeds up clustering of large protein databases. Bioinformatics. 2002 Jan;18(1):77-82.