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Query: gi|15604722|ref|NP_219506.1| aspartyl/glutamyl-tRNA amidotransferase subunit B (CT004) [Chlamydia trachomatis D/UW-3/CX], from C.trachomatis

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MGIAHTEWESVIGLEVHVELNTESKLFSPARNHFGDEPNTNISPVCTGMPGSLPVLNKDAVRKAVLFGCAVEGDVALFSRFDRKSYFYPDSPRNFQITQYEHPIVRGGCIRAVVEGEEKTFELAQTHLEDDAGMLKHFGDFAGVDYNRAGVPLIEIVSKPCMFSAEDAVAYANALVSILGYIGISDCNMEEGSIRFDVNISVRPRGSRELRNKVEIKNMNSFTFMAQALEAEKRRQIEEYLSYPNEDPKKVVPAATYRWDPEKKKTVLMRLKERAEDYMYFVEPDLPVLQITETYIDEVRQTLPELPHSKYMRYITDFDIAEDLAMILVGDRHTAHFFETATMSCKNYRALSNWITVEFAGRCKARGKTLPFTGILPEWVAQLVNFIDRGVITGKIAKEIADRMVSSFGESPEDILRRHPSLLPMTDDHALRAIVKEVVAQNTASVADYKNGKAKALGFLVGQIMKRTEGKAPPKRVNELLLAAMRDMLast
1 -149.000[J] COG0064 Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog)  ali follow..  38  7VSEKIMNFETVIGLEVHVELSTNSKIFSPASTKFGGDPNTNTNVIDWSLPGVLPVMNKGVIDSGIKAALALNMDIHKSMHFDRKNYFYPDNPKAYQISQFDEPIGYNGSIEIELEDGHATIRIERAHLEEDAGKNTHGDGYSYVDLNRQGVPLIEIVSEADMRTPEEAYAYLTALKEAILYTGISDVKMEEGSMRCDANVSLRPYGQEAFGVKTEVKNMNSFSNVKKALDFEVDRQAKILRAGGE------IRQETRRFNDKTGETILMRVKEGASDYRYFPEPDVPRFEISEEWVEQMRESLPMTAKARRAHYINDLALSDYDARQLTATKEVSDFFDQAIKFDTDPKLVSNWLQGEVAQYLNSEKKELHEIGLTPENLTEMIRLISDGTISSKIAKKVFIELAKNGGSAE--EFVKKAGLVQISDPAVLLPIIHDVFAKNEQSVADYRGGKQNAAKALVGQLMKATKGQANPTVAQKLLYQELDNF 488
2 -140.000[J] KOG2438 Glutamyl-tRNA amidotransferase subunit B  ali follow..  38  63LDEILRDYEAVIGIETHVQLSTLTKAFCSCSNNYGSYPNTSICPVCMGLPGALPVLNSKVVEFGVRLGLALNCDLSLKSKFDRKQYFYPDLPKGYQISQFDIPIASGGYVDVDIPLGHRRFGITRVHMEEDAGKLLHSGDYSQVDLNRAGVPLLEIVSEPDMRSGIEAAEYACEMQRIARYLGVSNGNMQEGSLRCDVNISIRPIGQAEFGTKVEIKNLNAFSAISRAIDFEISRQALLYNQGK----ADQIVTETRLWEEGAQKTVTMRKKEGLADYRYFPEPDLPEVILTQEYVDSIRASLPELPEAKRRRYEAMGLGM-QDVLFLANDVSVAEYFDAVIGKGAEVKLAANWIMSDIAAYLKNEKLSINDIKLTPQELAELIAAIKDGTISGKIGKEILFELLAKGGTVK--GMIKAKDLVQITDPAEIEKMVIQVVSENPKQLEQYRSGKTKLQGYFAGQVMKMSKGKANPGLLNKILLEKLNA. 548
3 -95.000[J] COG2511 Archaeal Glu-tRNAGln amidotransferase subunit E (contains GAD domain)  ali follow..  19  3.KYDYSELGLKAGLEIHQQLDSKEKLFCRCPTLIRDIGDSDFDTTCLIENDEEPPLNKEALDISLGVSKLFNMKPVDQMHVMRKIVVDGSNTSGFQRTAF---LASDGYIET----SEGRCGIDSLCVEEEAAQKIEEGDSIVYSLDRLGIPLVEIATAPDIRSPRHAREVAEYIGMVLRSTGKVKRGL--GTIRQDVNISIAR------GERVEIKGVQALDLIEDIVRREVERQLNLLFIRQELLEGIPEETRKALPD-----GNTAYMRPLPGAARMYPETDVPQIEISQEYFDSIK--PPELLTKRAKRFASESGLNKELAEKVAYSRYLPLFEILLETYTKDANVNSTLIARTLVGIVPEIRRNVETDNLTDEHFKGLFAAISNQEIAKEAIQDLLTALAKEPELTV--QEAISKLGLSAFDPEEVENFIKQMVMEKGDFI---KDKGPSALGPLMGIVMKEYRGTVDGKILSHMLKKEIDNF 629
4 -5.650[R] COG0218 Predicted GTPase  ali follow..  14  1.................MELNTHNAEILLSAANKSHYPQDELPEIALSNVGKSSFINTMLNRKNLARTSGKPGKTQLLNFFNDDKMRFVDVP-GYGYARVSKKE-REKWGCMIEEYLTTRENLRAVVSLVDLRHDPSADDVQMYEFKYYEIPVIIVATKADKIPRGKWNKHESAIKKKLN.................................................................................................................................................................................................................................................................................................................... 166
5 -5.550[S] COG1610 Uncharacterized conserved protein  ali follow..  12  25..................................................................................................................................................................................................................................................................................................................................................................AIRLVLAAIKQREVDEQITLSDDDIVAVLTKMVKQRRDSVSQYEAAGRQDLADAEKAEITVL--EEFMPQPLSDDEVKALIDSAIT-------ESAAAGMQDMGKVMAVLKPHIQGRADMGKVSGLVRAKLA.. 147
6 -4.980[H] COG1893 Ketopantoate reductase  ali follow..  7  5....................................................................................................................................................................................................................RVAVIGSGSIGLLLYAYLKLANWPALLVTNRPEQA--DHLNKEGLTFVAKSGEHQPISVTATPLSSFSAEEAEVGFITVKSFAVKALLPQLQRKKWDGLVFFQN--GMTHLEILRQIPARAICCGIVEIGAKRESDVRVQH--FDPMWACLHNAGLKAQ-ANAAINPLTGLFRVKNGALIENQLFSLLLKELVKE------ACVTLGREREVDEHLAYTRAICDKTANNLSSMYMDLTHHRRTEIESITGYLIKEAAKKGIEIPNTSFVYHAVMGM 298
7 -4.880[S] COG3350 Uncharacterized conserved protein  ali follow..  17  14........DPICGMPVKAEIRGGTYYFCNHKRSFLENPRIAYFPTCIYHRFSSPC-----------TGLSIV................................................................................................................................................................................................................................................................................................................................................................................................................................ 85
8 -4.350[I] COG2030 Acyl dehydratase  ali follow..  13  1...............................................GSPTMLAAISKQWVRGAKV----------EEDRIHPFRKYFEELQPGDSLLTPRRTMTEADIVNFACLSGDH----FYAHMDKIAAAESIFGERVV-----HGYFVLSAAAGLFVDAGVGPVIANYGLESLRFIEPVKPGD----TIQVRLTCSAEEKPTGVVEWAVEVFNQHQTPVALYSILTLVARQ............................................................................................................................................................................................................................................................ 175
9 -4.340[S] KOG0043 Uncharacterized conserved protein, contains DM10 domain  ali follow..  10  118..................................................GTLEIYEPRVDNSGIVQGCVVH-RVQKAPPCDNEFMSLIDLNVDQTVQIFDRQYHITD-------------PFTRTFLNKRGITVPDPVKSPCDPTEEQRKRENQPRSGNLIPKNHPFAQFLKYDRQILKFQAYWDDRTEFGDVRSDDTIEIKEQHIRNSGKRGRLREFEGLQLPGQMTPMTLGNKEIHYYREKDLQIGSVINPFTQNYEDSVGNCISVEPKPPKSDFKKFIKYDRYVLRFGAKMLST--------KANCERIFVISYYLCDDTLQIQEIAVRNSGFYTLMYMEHHPEIFPHANVGVIMEKVKSALQNRMAEFVGSCVPDCTDLEKKRDVFVSFESFKGALISIMGNQISDHEIISLCRKSQPNACDRSTVRAAAHLELKRTDDLMEHFHHINPTNQPFLPEVKVRSALRGCRLPFSLELIDNILSIL 644
10 -4.150[T] KOG3885 Fibroblast growth factor  ali follow..  9  76..............................................................................................YCRQGYYLQMHPDGALDGTKDDSTNSTLFNLIPVGLRVVAIQGVKTGLYIAMNGEG----YLYPS---ELFTPECKFKESVFE---YVIYSSMLYRQQESGRAWFLGLNKEGQAMKGNRVK-KTKPAAHFLPKPLEVAMYREPSLHDVGETVPKPGVTPSKSTSASAIMNGGKPVNKSKTT..................................................................................................................................................................................................................... 247
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 4 6   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;