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Query: gi|15604727|ref|NP_219511.1| HTH transcriptional regulator (CT009) [Chlamydia trachomatis D/UW-3/CX], from C.trachomatis

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140
# Score Template Links and tools%idFirst MSEHVHKELLHLGEVFRSQREERALSLKDVEAATSIRLSALEAIEAGHLGKLISPVYAQGFMKKYAAFLDMDGDRLLKEHPYVLKIFQEFSDQNMDMLLDLESMGGRNSPEKAIRSWLNLGWAGVFVVGAACIWWLGNLFNLFLast
1 -48.200[S] COG1426 Uncharacterized protein conserved in bacteria  ali follow..  25  4LNEAQEQQLKEISKYLLQVRQEKGIRIEEVAAKTNIRLYFLQCLDAGKFAELPEPVYIQGFIRRYADILGLDGQALAKTFSVSGESAIQESHRHEEEQIKQRPKLRIPL.................................. 112
2 -17.600[P] COG1513 Cyanate lyase  ali follow..  18  1MIQSQINRNLDLADAILLSKAKKDLSFAEIADGTGLAEAFVTAALLGQQALPADA------ARLVGAKLDLDEDSILL................................................................. 74
3 -16.400[K] COG4800 Predicted transcriptional regulator with an HTH domain  ali follow..  12  7VIKSAFESDEVFQKTLAVIKEDLNLTAVDFAKKANIPPSTLYKILSGNRD--PN-----KTLRQIVKTIRDIKESDSGEFIAVIAARS....................................................... 89
4 -16.000[K] COG1709 Predicted transcriptional regulator  ali follow..  17  14LAKRIAGEIPDPGKTMRKWREIFGISQTELADYLGVSSSVISDYEGGR-RKSPG-----STIRKFVEAL.......................................................................... 80
5 -15.800[K] COG1396 Predicted transcriptional regulators  ali follow..  19  1...........MSMRLKLLRKKLGVTLETLAEKTGLTKSYLSKVERGLNT-------SIAAALKLAKALNVQVEELFSE................................................................ 62
6 -14.800[K] COG1813 Predicted transcription factor, homolog of eukaryotic MBF1  ali follow..  7  99.PLITEDIVEDYAERVMEAIRKSGLSYEELSHKVGLSVNLLRRIAHGE--YTPT-----EEARKLERFFKIKLVEKVEADFEQKPVIPRDYEPTLGDIARIKVKKKKKK.................................. 200
7 -14.000[K] KOG3398 Transcription factor MBF1  ali follow..  10  75...THERVPTELKKAIMQARTDKKLTQSQLAQIINEKPQVIQEYESGK--AIPN-----QILSKLERALGAKLRG.................................................................... 140
8 -11.700[K] COG1395 Predicted transcriptional regulator  ali follow..  10  125........ISIEGDLLKKARTDQSMSLGTLASMVGVSRRTISKYEEEGMD--AS-------VLQLEDIFGVELARPIDILKSC............................................................ 193
9 -9.390[K] COG1476 Predicted transcriptional regulators  ali follow..  13  1...........MKNNIKVYRAIHDLTQENLAEKVGVTRQTINAIEKGKYD--PS------LAFKLSRLFKASVEDIF.................................................................. 60
10 -8.610[K] COG3655 Predicted transcriptional regulator  ali follow..  17  1.........MPIAVKLGVMMAERNVKSKDLAAYIGITEANLSLLKQGKVKGVRFET-----LEKICEFLDCEPGDILRIDRRGSSEQTD...................................................... 75
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Li W, Godzik A. In search for more accurate alignments in the twilight zone. Protein Sci. 2002 Jul;11(7):1702-13.