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Query: gi|15604729|ref|NP_219513.1| hypothetical protein (CT011) [Chlamydia trachomatis D/UW-3/CX], from C.trachomatis

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MINFVSWISRNWLQKLVSLGFAIIIWALANQSITVTRTFHNIPVRVIDLAPEQTVIGLQANGLLKKKVAMMITGNKSVVEKLRPSNLEIVISAKGRTESWIETIDPYNLVCLDTDIHLRKNIKSVTSEDIFIRLTQFVTEDVSVTITKPIGRAPKGYEYLDTWPKYLVQKVSGPKEYVSSLKDHGLELTFNLNKVSFEELDRNRLAQGNLDEVVYLVPEDWKKVYIPFDNSYMELNDPQADFLRLLFLKQEFIPLNINLPVLLFFPVENSQLVNPQNCYLEENAPLVLNHGIYQMDLPLYVKDVSHLFLDVVKNNIALTIIMEPPVKSQREHFIHWAVEFLDEKTLENTFVQAVMAQEQKTNKHMILDEAGIRHRFREYLRKLTLFDQNGEPLALTARTSGNKVIIQVTSSSLKKKSSLast
1 -57.000[S] COG4856 Uncharacterized protein conserved in bacteria  ali follow..  11  1...MDRILNNKWSIRIIALLLAAILFTSVNANNNDSEVIENVPVKVYYDKTNLYISG------IPETVTVTLSGPRSIVQSAKAQDFTVYADLKNASIGTQEVKLQVKDVS-------DRLKVKVNPATVNVNVQEKVTKKFSVDVELSKSVIADGYQAGTPIIDPKKVSITGAKDTIEQIAYVKATLESDKHKSEFTDKATVSVFDSNLNKLDVEVSPQEVEVTVPVEKV--------GKSVPVKIKQEGTPESDIEI-----------SSMTPDKSEVVVVGDDAVLDKIKEIEIPIDVTKIKADT------VKEITVPVPTGAKSVQPTTIEVKIKTVTSKSFSNMQVYMSGLKNTFDAQMLTPANGKVSVTITGEKKVLDDITAKDLSVIANLSKSKAGSYSIPLELNGLP... 422
2 -7.480[S] KOG3306 Predicted membrane protein  ali follow..  8  1.MTMTSIIRSSPTLAFIVLQICFIFFASTFPCSSGSEDSYTITGRVKIPPSNVIGHIAKFSN-----VKVILNGGQKITFLRPDGYFT----FHEVPAGTHLI---------------EVSAMGYFFSPVRVDVSARHRGKVQATLTETRRSIREPFNIMSIVKSPMGLMVGFMVVVVFLMPKLMENIDPE................................................................................................................................................................................................................................... 170
3 -6.700[S] COG5375 Uncharacterized protein conserved in bacteria  ali follow..  7  43.SARVKRLKIILPLSAAIISLAFIAVSVIRTWAPEKVSLESARIE----DGKIVMEKPAVAGRNEKGIDYSMNADRAL-NLMTLEKVLAAVPVNDSVAQVIAQEGIFDRSTNTLKMTAPFDINLAKFQSADVDLKAKMSSKEPVSIKTNDGSIAQSIDIAD---NGKTITFSGQVRAR................................................................................................................................................................................................................................................ 224
4 -6.680[M] COG5386 Cell surface protein  ali follow..  7  1MKKLWK--------KGLVAFLALTLIFQLADSRLKDGGEYQVQVNFYKDNTGKTTKESSEADKYDHTATIKVEGQPYMYLTITNSNYWQTMAVSKDGTRPAKPAQAEVYQDSYQDVQTVSTDAANNTRVEKFKLSSLDDIIYTIPFVAKKANDDSNSSMQNYFDNPAWLKVKNGKKTV--------AMTVNDNKTVTALKTQISGALQDVKVVSEDKDANTRIVEFEVEDLNQPLAAHVNYEAP-----FNGSVYKGQADFRYVFDTTKAQAASSYPGSDVTPPVDPGETNPPVTKPDPDPGTTNPPVTTPPTTPSKPVVVDPKNLLNNHTYSIDFDVFKDGTNETSMMESYVM----KPAIIKVENNQPYVYLTLTNSS----QYKQNGVWKDMEVVSGDINKNTRTVKYPVKDGTA 449
5 -6.130[S] COG4885 Uncharacterized protein conserved in archaea  ali follow..  10  2..........NEKVVVAAIVIIIASAIAVAVKFESYARFGDIDMKLEAVNDSHAVVTFVTEVRKENVEEFAIK-----------------AKIYDIQTDLLLNELEETFKSPESRFTAELTIPFEKTRDYKIVLGDRIYDSYRLTLRNLRNLVSE--------DMKLEASLVDSDFLLTSVKNGSVGFVARFYVESVKDYDVVARIKVLQADSNVLVGESWKNVTLQIVSAEFEVPDDYNYVVKLDVWRNGKLVKSWADVLNLAPTKKLSKGEVEKEVDFEAE....................................................................................................................................... 261
6 -5.600[S] COG5608 Conserved secreted protein  ali follow..  7  3..............KVGAIIGIIFLSWLLYSAYFVMNFSPTVRGEWGPMEGNNVEIIFHVDLGNPSPIPVAVQSLNLSLAGVEERSTNVVAVVNLDKIAEALVNHIKDKENSIAEINANIKVLGFIPIKYSKTIPVKTNILSFL-----QNVTAEPRVYSLGMIPFKTPGIEGIYARWGKVSTKEIELVGT-----------IKLYNPNSFPIPV----TNLKADMYMNNIKI--EGRTLKGTILQPNSRGTVDVALTFDVEKLKEAFKEHIRNGERSTVKVDIELVVEVGGAEYEVPIKDIE................................................................................................................... 282
7 -5.110[S] COG1511 Predicted membrane protein  ali follow..  11  4IRSQWKDIVTSKKLLIPIIAILFV-GVFLKAYWDPYGTVDQLPVVVVNQDKGATYEGEKLQIGDDLVKELKSNDLDQSLKDLLNQKYYLVVEIPEDFSKNASTVLDKNPKKLDLKYHTN-TIGEKAIDKLKASVSKEVTEQYTKVIFDNFKDIAKGLSDASSGAKKIDDGTKDAKNGSAQLKENLAKLKESTATISDKTAQLADGAAQVTSGIQ-SLDSSLGKFQDSSNQIYDKSSQLAAGSGELTSKMNELLAGLQNVQKGTPNLTNGLDQLNSKVQEGSAAKAEKIINALDLTKLETAVNNLEKSETAMKEQAFKNVINSSDFLTAEQKSQLINSVEKKLPQVDAPDFDQILSQLPTADQLPDIATIKSSLEDVKAQVAQVKAMPEATSKLYNGAKTIQDAIDRLTEGAD...... 452
8 -4.850[P] KOG1603 Copper chaperone  ali follow..  9  1.................................................................................MATDEMK-----SETKKTEHKQKQSTQIKQDLPPPTIPPLPLPYKSCTLKVSIKRKVKKILT-----------EGVFKVDIDVKQHKVTVIGPEILLKKLNKAGKNAEQ.................................................................................................................................................................................................................................... 103
9 -4.820[S] COG4698 Uncharacterized protein conserved in bacteria  ali follow..  9  1MKKKSNL--NWWKWSFLCLLAFNTAFLMV--------------IASRLIQVREPESELIAKKPVKNIKIGTFVTTREQLNETVASYLKDYQT---ATSSSILFEGTYQLLGYEVPLYIYFQPHRLENGAVQLQVISFSVGTLPLPEKDVLQYLKSSYKL------PSFVKVMPNQSAI--------VVNLQDIQNDAKVYLKAKKIDLFNDEISFNI......................................................................................................................................................................................................... 192
10 -4.520[S] COG3924 Predicted membrane protein  ali follow..  15  1MDTRFVQAHKEARWALGLTLLYLAVWLVAAYLSGVAPGFTGFPR...................................................................................................................................................................................................................................................................................................................................................................................... 44
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Grynberg M, Topczewski J, Godzik A., Paszewski A. The Aspergillus nidulans cysA gene encodes a novel type of serine O-acetyltransferase which is homologous to homoserine O-acetyltransferases. Microbiology. 2000 Oct;146 ( Pt 10):2695-703.