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Query: gi|15604726|ref|NP_219510.1| ribonuclease HIII (CT008) [Chlamydia trachomatis D/UW-3/CX], from C.trachomatis

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MPSSFVSQLSPSLFSILREQLEKKGFTISIPPHTVFQGRSPTVSCTVYQSGKIVVQGKGTQEFVEFFLEPEILQTFSSQNVQQDLRSRIGVDESGKGDFFGPLCTAGVYASSPQAIEALYKTSICDSKLIPDAKILSLAQNIRSLCACKVITLFPEKYNALYANFQNLNSLLAWTHATIIDNLAPHPAGAVFAISDQFASSERVLLQAVRKKCSDIELIQRHRAEQDVVVAAASILAREAFLSSIHALESQYQIRLLKGASGKVKQRAKEILHNKGQVVLEKVCKTHFKTFNEVLGSGNQLast
1 -6.800IDP04065 gene: yyaC; putative sporulation protein YyaC [Clostridium perfringens ATCC 13124] CPF_2985 [Clostridium perfringens ATCC 13124]  ali follow..  12  2.................................................CTSFYINSLDPKASFKIRDYLCRELSPVIKENRPIVFICIGSDRS-TGDALGPLIGEKIKFLSKNNIFIYGTL----EETVHAGNLKETVKIIKSKHKKPFIIA----IDACLGVVDNVGHVL----------IEKRPLKPGIALNKDLPEVGDLSILGIVNISGSLEFMVLQNTRLYTVMLLANAISNG............................................................. 172
2 -6.520IDP95423 set236a-025 [Undefined organism]  ali follow..  12  12...SISTDRSRIDLDLVHSFLSNSYWARNIPREVVRRSVENSLCFGVYEGVAQVGFARVLPDIATFA-----------------ADVFILESHRGRG--LSKWLVESILGHPDLQGLRRWMLATRDAHGLYSK....................................................................................................................................................................... 124
3 -5.760IDP04194 gene: yyaC; putative sporulation protein YyaC [Clostridium perfringens ATCC 13124] CPF_2444 [Clostridium perfringens ATCC 13124]  ali follow..  13  34........................................................................................IGTDKC-IGDCLGPLV-GTLLREKFFPLKVFGTL----DSPIHALNLDKKITEILKTYPGYKILA----IDACLGDSNSIGEIH----------ARYEPIHPGKGVGKSLRSVGDMSIIAIVDSSENIDLFTSRPIRLSFILDMSKVIVD.............................................................. 163
4 -5.340IDP05360 gene: rnhA; ribonuclease H [Bacillus anthracis str. Ames] BA_1623 [Bacillus anthracis str. Ames]  ali follow..  14  4........................................................................................VYIDGASKGN--GPSGAGVFIKGVQPAVQLSLPLGTMSN---HEAEYHALLAALKYCTEHNYNIVSFRTDSQLVERAVEKEYAKNKMFAPLLEEALQYIKSFDLFFIKWIPSSQN---------------------------KVADELARKAILQ......................................................... 127
5 -5.310IDP92653 hypoxanthine phosphoribosyltransferase [Plasmodium vivax Sal-1] PVX_094840 [Plasmodium vivax Sal-1]  ali follow..  7  40........................................................................................................ITKVLIPNGVLKNRIEKLAFDIKQVYRNEEFSALLKYLNRIHNYSSTESPKHLYVEHYVRVKSYCNDQSLDRIEIVSEDLSCLKDKHVLIVEDIIDTGKTLLKFCEYL----------KKFEVKTIAITCLFIKRTP-LWNGFKADFVGFSIPVGYSLDYNEKFRDL............................. 212
6 -5.170IDP05274 hypothetical protein lmo1880 [Listeria monocytogenes EGD-e] lmo1880 [Listeria monocytogenes EGD-e]  ali follow..  10  3........................................................................................VFVDGASAGN--GPSGAGIVLKADGIYEQFAIPLAVMTN---HEAEFIAIKLGLEEALKKQATLIRLYSDSKVAIEAIHKRHAKNPLFKPHLDAILEMADSLELFFAEWRNVSQN---------------------------KQADQLARQAIKKQKQP..................................................... 130
7 -5.080IDP92652 hypoxanthine phosphoribosyltransferase [Plasmodium falciparum 3D7] PF10_0121 [Plasmodium falciparum 3D7]  ali follow..  8  40........................................................................................................LTKVLVPNGVIKNRIEKLAYDIKKVYNNEEFTALLKHLSRIHNYSAVETSKPLFGEHYVRVKSYCNDQSTGTLEIVSEDLSCLKGKHVLIVEDIIDTGKTLVKFCEYL----------KKFEIKTVAIACLFIKRTP-LWNGFKADFVGFSIPVGYSLDYNEIFRDL............................. 212
8 -4.980IDP90589 acetyl-CoA carboxylase [Vibrio cholerae O1 biovar eltor str. N16961] VC0296 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  7  37.QDKRERNMDIRKIKKLIELVEESGIAE-------LEISEGEESVRISRYGQPAPAPQVHYAAAPAPVAAPAPVAQAAAVAEAPAA----AKVPAGHKVLSPMV-GTFYRSPSPDAKAFIEVGVSVGDTLCIVEAMKMMNQIEADKSGVVTAIQTVEFDQ............................................................................................................................................ 190
9 -4.920IDP92081 thymidylate kinase, putative [Toxoplasma gondii ME49] TGME49_106970 [Toxoplasma gondii ME49]  ali follow..  14  16.........................................................................................GIDRSGKSTQARLAY------------ERLTKEGHAAELIRFPDRTTPIGQVLDRFLANASWSSDGQHPQVPPPQLTHL--LFAANRWEAQARILRALGEGRTVLVDRYSFSGIAYT.............................................................................................. 118
10 -4.840IDP00752 ABC transporter, ATP-binding protein SACOL2211 [Staphylococcus aureus subsp. aureus COL]  ali follow..  10  40.......................................................................................IVGHNGSGKSTIAGEIFYNNQAITDDNFEKLRKDIGI-DNQFVGSIVKYDVADEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIASVL------ALNPSVIILDEATSRQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIGTVYKEGTATEIFDNAEELTRIGLDLPFPIKINQMLGHQT........................ 257
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 5 5 3   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Veeramalai M, Ye Y, Godzik A. TOPS++FATCAT: fast flexible structural alignment using constraints derived from TOPS+ Strings Model. BMC Bioinformatics. 2008 Aug 31;9(1):35