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Query: gi|15604734|ref|NP_219518.1| hypothetical protein (CT016) [Chlamydia trachomatis D/UW-3/CX], from C.trachomatis

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKVKINDQFICISPYISARWNQIAFIESCDGGTEGGITLKLHLIDGETVSIPNLGQAIVDEVFQEHLLYLESTAPQKNKEEEKISSLLGAVQQMAKGCEVQVFSQKGLVSMLLGGAGSINVLLQHSPEHKDHPDLPTDLLERIAQMMRSLSIGPTSILAKPEPHCNCLHCQIGRATVEEEDAGVSDEDLTFRSWDISQSGEKMYTVTDPLNPEEQFNVYLGTPIGCTCGQPYCEHVKAVLYTLast
1 -126.000IDP90360 hypothetical protein [Chlamydia trachomatis D/UW-3/CX] CT_016 [Chlamydia trachomatis D/UW-3/CX]  ali follow..  100  1MKVKINDQFICISPYISARWNQIAFIESCDGGTEGGITLKLHLIDGETVSIPNLGQAIVDEVFQEHLLYLESTAPQKNKEEEKISSLLGAVQQMAKGCEVQVFSQKGLVSMLLGGAGSINVLLQHSPEHKDHPDLPTDLLERIAQMMRSLSIGPTSILAKPEPHCNCLHCQIGRATVEEEDAGVSDEDLTFRSWDISQSGEKMYTVTDPLNPEEQFNVYLGTPIGCTCGQPYCEHVKAVLYT 242
2 -6.430IDP02032 gene: mobA; molybdopterin-guanine dinucleotide biosynthesis protein A [Yersinia pestis CO92] YPO0013 [Yersinia pestis CO92]  ali follow..  10  10........................SIGCSGAIEMQPNITGVILAGGRSSRMGGNDKGLIP----NGKPLFQYVIDRFKPQVSDLVINANRNQGLYKESGIPVIDDI--ITGFVGPLAGMHAGLSYASTECDVPALPSDLVSQLWQGKK----QALAAYANDDERAHPTFALMHISLKTQLADYLIRGDRKLMLFKFSGKADLFSNLNTPADCDLWEQKRRGQ.................... 213
3 -5.260IDP01063 gene: grxC; glutaredoxin 3 STM3702 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  15  12......................................................................................................................................................................CPFCHRAKAL-------LNSKGVSFQEIAIDGDAVKREEMIKRSGRTTVPQIFIAQHIG------GCDDLYALDAR 75
4 -4.760IDP95208 gene: wagH; WagH [Acinetobacter baumannii] AHB32776 [Acinetobacter baumannii]  ali follow..  46.....NLYFLKDELRVDVKWGGFSQVQATSFVFHNSDSEFFHVVSGE--DVILSTNKNLSETLTWSNIFMELTDSPRHRYRVRFFAPHVETRWQRKLVGKLFTFSLKILDKIFITKKDFWFGSNW--------SIRREELKIILNSITDRDISLFKHRLNPDE----HFFQYIVVKAGLRNNISLKGNNRYIIFDLKNTCSHFF--ARKVDIDNQLKYY....................... 269
5 -4.600IDP90509 gene: trpF; N-(5`phosphoribosyl)anthranilate isomerase [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj0347 [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  13.............................................KNAKDLAFLNIDFFGLIFAKSPRRVSLEQARNLSAIFHEKDKKVVGVFVDENLEQIL---------RCIKEAKLDGIQIYRTI---TKEEFEILKVQNVFVWQVISVENSLDLKSEI--------FANLVLFDAKGILKGGNGISF-DWTLLGSYTKDFILAGGIGLDNAKILDLNSKLEDEKGLKDINKIKQILKE 196
6 -4.560IDP95184 gene: lmo0178; lmo0178 [Listeria monocytogenes EGD-e] CAC98393 [Listeria monocytogenes EGD-e]  ali follow..  10  30..........................................ITRTEIAKKCDFGMSTLTYILD---DLQQEGIILEGAETSSTGGRRAKLVRFNKDYGFVVSVKVEEEQLLFALTDLNAEIIENTSIPFSSEKKPEEAIELIAKNVKKM-VNRKKGTVIRSTMLGWENVALEAMLHAHFPD-YVDKNIN-----CYTLAELWLGEGK--QSNNFATVSVGAGLGCHCGQKGCLEMYA.... 266
7 -4.540IDP01801 gene: grxA; glutaredoxin 1 [Francisella tularensis subsp. tularensis SCHU S4] FTT0533c [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  12  10.....................................................................................................................................................................GCPYCVWAKQWFEENNIAFDETIIDDYAQRSKFYDEMNQSGKVIFPISTVPQIFIDEHIG------GFTELKANADK 81
8 -4.410IDP91003 gene: sufA; iron-sulfur cluster assembly scaffold protein [Yersinia pestis KIM 10] y1934 [Yersinia pestis KIM10+]  ali follow..  11  30......................................................................................................................................ITDSAAAQITRLMQQDPQIKGLQLGVKQSGCAGFAYVM------DMAKEPASDDLVFEQGSARPLKAMPFIDGTEVDYVRE-IFKFNNP-SCGCGES........... 129
9 -4.320IDP02723 gene: nuoI; NADH dehydrogenase subunit I [Francisella tularensis subsp. tularensis SCHU S4] FTT0039 [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  15  17...................................................................................................................LKGLKVTGKHFFTRKVTVQYPDE---KTPISNRFRGLHALRRYENGEERCACKLCEVVLAITINSTEREDGTRRT-----------------------SSYEMDLFKCIFCGYCEESC......... 112
10 -4.270IDP06453 gene: F4L; F4L [Monkeypox virus Zaire-96-I-16] NP_536480 [Monkeypox virus Zaire-96-I-16]  ali follow..  17  158.....................................................................................................................................................................PCPNCKSRNTT---------------------------PMMIQTRAADEPPLVRH-----CRCKQHFKPPKFRAFRN 204

FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 6 0 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Pio F, Pawlowski K, Godzik A. Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology. Bioinformatics. 2000 Dec;16(12):1105-10.