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Query: gi|15604735|ref|NP_219519.1| hypothetical protein (CT017) [Chlamydia trachomatis D/UW-3/CX], from C.trachomatis

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MLIFALSFGADACLCAADLSKAKVEASVGDRAAFSPFTGEIKGNRVRLRLAPHTDSFIIKELSKGDCLAVLGESKDYYVVAAPEGVRGYVFRTFVLDNVIEGEKVNVRLEPSTSAPILARLSKGTVVKTLGAAQGKWIEIALPKQCVFYVAKNFVKNVGALDLYNQKEGQKKLALDLLSSAMDFADAELQKKIEDIDLDAIYKKMNLAQSEEFKDVPGLQSLVQKALERVQEAFLAKSLEKSSVKVPEIRHKVLEEIAVVSPAVEETPVVTKTEEQKVTTVPVPAPAVVTEPAQDLSSVKGSLLSHYIRKKGFVKASPVIEGRESFERSLFAVWLSLQPEEIRHQLTMESFYRDEQKKKRVLTGELEVYPHIVKNNPGDYLLKNGEDVVAFVYATSIDLSKWLGKSVVLECVSRPNNHFAFPAYIVLSVKEGALast
1 -49.700IDP05719 peptidase, M23/M37 family [Bacillus anthracis str. Ames] BA_1903 [Bacillus anthracis str. Ames]  ali follow..  13  27.................TVIQKEAKHEKPTDVVKYENQVTVNTNALRVRTQPNTSSTIMGRVYEGEVLQVIGEENSWLKINH-KGKTGYVSSEFVSSKTVIANVLRVRTQPNTSSAIMGRVYEGKALQVIGE-ENGWLKIKH-NGKVGYVSSQFVIDGTSNG-SDKNNGKVQVASGNYKVNVSSLRVRTGPSTSHTILGSVHKGQIVQVTGEVQDWVKI--NYSGQTAYISKDYISKNDFNANVDQQKNITVQTDGTYIVDATSLRVRTGPATYHSVIGGVLNGRILQVTGVENGWLKINHNGRTGYVSSEYVKFVKGNTPSKPETSNPSTGA----TVGDYYVNVNVLNVRSGAGTNYDVIGALSKGIKVQVLFEQNGWGKINYNGKTGYVSSKFLSKTS................................ 418
2 -44.300IDP05176 conserved domain protein [Bacillus anthracis str. Ames] BA_2967 [Bacillus anthracis str. Ames]  ali follow..  16  1.............MKKVIGAATATVFGLGAFTTTATAETIVTADVLNVREKPTTESKVVEKVKNGEELKVINTEDGWSKIEL-NGKEVFVSSEFTKIYHVTADLLNVRSESNTESKILGRLKKDDVIESTNQVKDGWLQFEY-KGKTAYVNVSFLSSKAPVEKKADEKTKQVAK................................................................................................................................................................................................................................................................... 160
3 -43.200IDP05169 NLP/P60 family protein [Bacillus anthracis str. Ames] BA_1952 [Bacillus anthracis str. Ames]  ali follow..  12  23........SAQAQVSNEALKTQTTVTETKTVETKSDLKYTVTADVLNVRSGAGTGHSVISKVKQGQVLQVIGQENGWFKVTV-NGQTGYVSGDFVTTYTVNVSSLNVRTGPSTSHTVLGSVNKGKTVQVVSE-VQDWFKINF-NGGTGYVSKDFVTKGGSAVSNQTQQPTTNNNTTTVQTGGSYVVNTRTGPATYNAVIGGVTNGTVLNVTGAENGWYKIN-HNGRTGHVSADFVKFVKGGVNNVTNNVQQ---------PVKDVQKPTTGGNTSSIAGFARSLNGSPYRTAGTTPAGFDCSGFIHYVLNQTGHKGARQTVAGYWSSKTKTSNPQPGDLVYFQNTYKSGSHMGVYLGNGQFISAETDATGVRISSVSNSYWSKHLGYTKAY.......................................... 420
4 -40.300IDP05154 conserved hypothetical protein [Bacillus anthracis str. Ames] BA_0796 [Bacillus anthracis str. Ames]  ali follow..  16  3........KFMGIATAAVFGLGIFTTSAKA-------ETIVTTDVLNVRENPTTESKVVGKLLDGYKVNVLHTENGWSKVKLNSGKEAFISADYTKTYYVTANVLNVRAGANTDSEILGKLKQDDVIETTHQVENGWIQFEY-NGKTAYVHVPYLTGKAPVKVQPVVKAEKTTTVQ................................................................................................................................................................................................................................................................. 163
5 -38.400IDP05737 hypothetical protein CD1990 [Clostridium difficile 630] CD1990 [Peptoclostridium difficile 630]  ali follow..  15  1.............................................MNLREKPDINSLKLKSIPEGKIVKLKCVDGIWAEVES-NYDKGWLLYKYLENIRTNGLSLELRNDRTLESKVITTIPDGFKVEVCYS-VGKWARVNINKNESGYVYNQYIEEHLS................................................................................................................................................................................................................................................................................. 138
6 -38.200IDP05524 putative cell wall hydrolase [Clostridium difficile 630] CD2402 [Peptoclostridium difficile 630]  ali follow..  16  3FNQKRIAASIMATAIIMPTMGNLAYANESEVESVSIESRTITGNAVNFRKGPGTNHESMGKLYKGDKVEYVGKEGSWVKVKY-NGNTGYVHGNYVATKVVTAKGLNFRTGPSTSSSKISTLGYGTEVGYISE-SNGWSKISS-NGRVGYVSSKYLGTSVNDSTNENAENSSNDLVKGTKVVTAKSLNVRTGPGTSHSKIATLSYGTEVGSISESGGWTKVS--GNQTGYVSSQYLAEKGSVDTSIPSYSTNSPSQGADSVISFAKT....................................................................................................................................................................... 281
7 -30.800IDP05556 hypothetical protein lmo1521 [Listeria monocytogenes EGD-e] lmo1521 [Listeria monocytogenes EGD-e]  ali follow..  12  21...........................FTTIAMANANSVVVKAEVLNVRSGPGLAYDVTSQARKNEVLRVVGEENQWYKVQLDNGTSAWVSSDYLTTVTIRDDSTNIRNKPSRDGAVIEKANSGQGFAIQGV-QGDWYKIRTTSGEEGYVANWVVDVSDKGQTSSPRSKTTKLSEATIVIDPGHG----GNDPGAKGANGTIEKEMTLKTAKQLKQKLEARGAKVILTRNSDKYVSLKGRTNIAAENNADVFISIHFDSLEDASKGVS-------------GQTTYYYDNSDKSLAESINTTLGKDLPTTNRGARVGDYYVVRENSQPAVLLELGYLSSAKDENNINSASY--RSQIAESVTDGLSNYFSN.............................................................. 427
8 -30.200IDP05459 conserved domain protein [Bacillus anthracis str. Ames] BA_0873 [Bacillus anthracis str. Ames]  ali follow..  13  57............................ENDLEISGEYLLHLSTKLPLYDSNDLKTKTNIEIA-EPVVKATKKKNNAYYIQTTSGA-GWVNKENNSQKLIVSEETSIYSFPFQSFKEEMKLQPQT-VAPTEQ-AGNWFKIQMNGTE-KWIYAPSATFEGTKATLFEKKFLWKIEAPHFSKHHL.......................................................................................................................................................................................................................................................... 217
9 -29.300IDP06518 gene: ami; N-acetylmuramoyl-L-alanine amidase [Enterococcus faecium DO] AFK59731 [Enterococcus faecium DO]  ali follow..  2.......................................................KKIIGAFVFAIIIIII-----CFQIDV-FGQKKIVGQTVSSLIKIGKNDRTLYTDDSLTT-PLATINGGELAEFLSE-TKNAYQIKTNDGYTGYLALEDGTKVTKNIQTKPEESDAVIVLDPGHGGNDTGALSNDE--------QTEEKDITLSTAIKVKKALEDAGATVYLTHTTDELVQLGDICDYSEEKKADVFISLHADSTEYAN---------------EATGITTYYYYGQEETLAQTIADSFTDLPLDSRGISTGNYQVLRENLQPSILIEMGYMNNDSDLKELVTDSY--QQQIAASLTQALTTYFQ............................................................... 303
10 -28.500IDP01978 gene: ygiM; putative signal transduction protein [Salmonella typhimurium LT2] STM3203 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  18.............................AVSHAEETRYVSDELNTWVRSGPGDNYRLVGTVNAGEEVTLLQSDANYGQIKDSSGRTAWIPLKELNTTTDKLNNIDTTWNQRTADMQQKVAQSDSVINGLKE-ENQKLKNEL-IVAQKKVSAANLQLDDKQRTIIMQ.......................................................................................................................................................................................................................................................................... 170
11 -25.800IDP05095 conserved domain protein [Bacillus anthracis str. Ames] BA_5481 [Bacillus anthracis str. Ames]  ali follow..  11  1.............MKKLIGIATAAVFGLGIFTSSANAETVVTTDVLNVRENPTTESKVVGKLLNGNKIDVQNTENGWSKITL-DGKDAFVSAEFTKIYYVTANVLNVRAEANTDSEILGTLKKDDMIETTNQVQNEWLQFEY-NGKTAYVHVPFLTGTAPVIEKQEQPAPAKAVAPAKAPAAQAKQAAKPAVKAANTSAPAGGRELTVVATAYTAHPSENGGTYGGRV-------LTAMGHDLTANPNMKMIAVDPKVIPLGSKVWVEGYGEAIAGDTGGAIKGNRIDILLGSDSAA........................................................................................................................................ 276
12 -25.400IDP01219 prophage LambdaBa01, N-acetylmuramoyl-L-alanine amidase, family 2 BA_3767 [Bacillus anthracis str. Ames]  ali follow..  20  160...................GDGKVTPTLIPPSTNGTGIAYIEGNGINLRKGLGTGYGVIRQLGKGESYEVWGQSNGWLNLG--GNQWIYNDSSYIRIVTITADVLRVRKGPGTNYDIVKNVYQGEQYQSWGYRDG-WYNV----GGDQWVSGEYVKFED.................................................................................................................................................................................................................................................................................. 310
13 -25.200IDP05123 conserved domain protein [Bacillus anthracis str. Ames] BA_3845 [Bacillus anthracis str. Ames]  ali follow..  12  1.............MKKLLGIATAAVFGLGIFAGSAKAETIVTTDVLNVRENPTVESKLVGKMLSGNKLDVINTENGWTKIKV-NGKEAFVSAEFTKTYYVTAGVLNVRAGANTDSEILGKLNKDDVIETTNQVQNEWLQFDY-NGKVGYVHVPFLTGTAPVVEKKEVVTQEEAPVRVNAPVKNNKVVKNKESVKNV---------ESSKPVAKAKPAVQQVAKSKGTSAPAGGREITVEATAYTAHPSENGTYGGRVLTAMGHDLTANPNMKVIAVDPKVMPLGSKVWVEGYGEAIAGDTGGAIKG............................................................................................................................... 283
14 -16.700IDP05471 conserved domain protein [Bacillus anthracis str. Ames] BA_2159 [Bacillus anthracis str. Ames]  ali follow..  12  2.....................................................................VWGKMDGWLNL----GGEQWIKND--KRVVSKVNNLCFYDTPSQDKDVAGSVDAGLGFIIDAKISSYQYKVHNSHGQVFYITDTYVN..................................................................................................................................................................................................................................................................................... 106
15 -16.100IDP05258 putative N-acetylmuramoyl-L-alanine amidase [Clostridium difficile 630] CD2761 [Peptoclostridium difficile 630]  ali follow..  10  1.............................................................................MKKKLLDGKITLIICKSVKSKKTSHLNRKKRKLNKKKLAVLICFTVLFLFIAFKA-TQGVVALVKSMDKSNKTSQQQNVNSEQFDLGNEEEKKYTVFIDPGHGGNDKGTESKTSNRYEKDLNLQIAKKLANKLSKQKD-------IQVVVSRTDDTYISLKDRAILANNSSADVLVSIHLN-----------AEKNGNTATGIETWYRNKATDGSKELAQTVQSTIVSYVKVRDRGIVENNFEVLRESNMPAILIECGFLTTPSEEQKIINEKY--QDQLAEGIVQGVLSYLDSK............................................................. 298
16 -15.900IDP05173 N-acetylmuramoyl-L-alanine amidase, family 3 [Bacillus anthracis str. Ames] BA_2528 [Bacillus anthracis str. Ames]  ali follow..  44.........................VDKQVLSGYPDGTFGSSDTLDRASAATIMTKALGIHIDLNAKPSFKDSQNHWGTPYIAAAEKAGIIKGEAAMATMLVNAYKLQNKNTSNGQSKFEDLKGHWGEKFAN-TLIDLKISV-GTDNGWQPNKFITRAEAAQLTAKTDMLQYSHSNPLENKTIIIDPGHGGEDPGKDTKGLPESKIVLDTSLRLQKLLEKHTPTVLLTRKSDTRSSLQERVKFAKQNQGDIFISVHANAFNGNAKGTETYYYKSSK-----SEKTNPHVEESRVLAEKIQTRLVDALQTRDRGVKHGDLHVIRENDMPAVLTELAFIDNGIDYSKLSTENG--RQIAAEAIYEGILDYYEWKGNNVSEYRL.................................................... 410
17 -15.300IDP05030 N-acetylmuramoyl-L-alanine amidase, family 3 [Bacillus anthracis str. Ames] BA_0898 [Bacillus anthracis str. Ames]  ali follow..  12  187...................AEAAQFIAMADQNKTSTSKRMYMNRNVITYHQPSLSSGITDVQHKPQMVEVTEQRADGWLKIVTSKGEKWTPLTEKT--ETINEEFTTYETASHSSKVLGTY-NAQTVTVMEE-SGSWIRIRVGAGF-QWVDKNQLNPVKQ----ENFLEGKAIIIDPGHGGIDSGNVGY----------YEKESETVLDVSLRLKKIFEQKAPTVMFTRTDNTRPSLKKRVEFAQEHNGDIFVSIHANGSAEKNGQ-----TETLYYQSARAKVTNPHVEDSKLLAQKIQDRLVAALGTKDRGVKHQDLYVTRENTMPAVLTELAFVDNKSDADKIATPKQ--RQAAAEAIYQGILDYYEAKGNNVSS....................................................... 527
18 -15.100IDP06141 hypothetical protein jhp1268 [Helicobacter pylori J99] NP_223986 [Helicobacter pylori J99]  ali follow..  20  323...............................NLLFTQKSALLLAHKKIRILPTQNSTILGLSRDEMPIKILGSHDDYYKILTPHEQIGWVKKDEVK................................................................................................................................................................................................................................................................................................................................................. 387
19 -13.900IDP01929 hypothetical protein lmo1076 [Listeria monocytogenes EGD-e] lmo1076 [Listeria monocytogenes EGD-e]  ali follow..  13  393...FQVGGKTIGWLDARAFHVYDKIQSQSNVNWNRT---ILNADKHGVYSGVSSSMNKLSTGAKNKKVKVIKQRGTWYQFQVNGKTVGWMDYRAFFDTITSQKTMNKRTSPTVKRISLGKPYNNKKVKVLKEAHATWVQFKY-GNTTAWMDKKAFK..................................................................................................................................................................................................................................................................................... 571
20 -13.600IDP01859 gene: ami; autolysin, amidase [Listeria monocytogenes EGD-e] lmo2558 [Listeria monocytogenes EGD-e]  ali follow..  11  593...................ATQYDKLEYDKAITAYSRVKTATGNSVWTKPYRTSGYKLVNPLSAGKNLRIIRESGIWYQFSIGGKTIGWVDSKALNTSKFNGQALTLQREATIEGQLWYRVKSGKNMRILREAKTSWYQFSVGGKTIGWVETKALNTFYTPSMEKNLTATRYVLTSKKNEHYYGLPVVDSAIDRGPLSKFSGKTLTVQREATIEGQLWYR----KDLGWTKAANLSAKKQ................................................................................................................................................................................................. 917
21 -12.900IDP05328 GW repeat-containing surface protein [Listeria monocytogenes EGD-e] lmo2591 [Listeria monocytogenes EGD-e]  ali follow..  329...ISEGEKVIGWVRADKLNDRLYDRITEQTSYDGYALVSKSATNVWTAPFNTKNAEKLAPLANNEKLEIVTRNTLWYQFKVDGKLVGWASEKDLNVAYVKDPTAKLYNKPESTSTNPKAVGFGKLLAVDKTLGEDWLHLKDSQNSLGWIKAIDINS.................................................................................................................................................................................................................................................................................... 508
22 -12.600IDP02025 hypothetical protein lmo0394 [Listeria monocytogenes EGD-e] lmo0394 [Listeria monocytogenes EGD-e]  ali follow..  14  1.MNIIATRRKIFFAFIALMISFSVLFLPTTNASAATTYKMTTTADVNVRAADNTKGKVIGFYKKGTTVNFTATKNNWYKTT-YKGKVGYVSGKCVTTYKAPVATTQSFTKKSIPRTAKQQYASAKKIKAKELKKGDLIFFNYGKGVA-YVNGKMLNAQNNGVKYDTITSG....................................................................................................................................................................................................................................................................... 211
23 -11.000IDP05289 putative N-acetylmuramoyl-L-alanine amidase [Clostridium difficile 630] CD0784 [Peptoclostridium difficile 630]  ali follow..  2.......................................................................................GIIIIGTSNPVSNFYKTTNLISSGNITNEKA---DKDENSNKNNK-DKNEDKSNSKSNKDKSSE----DKSSDNKNEIQKNKKLLICIDPGHQGKGDSNLEPVAP-TEGIATKKPEYVLNLEASLVLKSILESKGYNVIMTRTHDVNISNSERAILANDKKADMVVRIHADSLNNSSKT-----GASILIPEKDGKYTAPIYEESNKCAEFIKQNMEQSGIQINGIVQRGDLTGFNWSKVPAVLVEMGFMSNYNEDKMMSNPDY--QRKMMQCIADGLDAYFK............................................................... 281
24 -9.580IDP05489 gene: cwlD; germination-specific N-acetylmuramoyl-L-alanine amidase [Clostridium difficile 630] CD0106 [Peptoclostridium difficile 630]  ali follow..  10  1........................................................................................................................MEYYSVFISIHI-QGDVVRKYIKHIIFSFAMICLVKNISEDVIKYMPVTNKTIILDAGHGGIDPGALNKDK--------STSEKDINLAITLKLRELIESSGGLVILTREDDSSLNLKNRKEIISNSNANMFVSIHLNAFEQSKYYGAQTFYPKDK-------------QDSKELSKCIQEELKRVVTNNREVKPRDDIYLLKDNNIPSVLIECGFLSNEKECKLLTDETY--QEKIAWAIYIGIQKYLS............................................................... 250

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Nika K, Tautz L, Saito K, Cerignoli F, Friedberg I, Godzik A, Mustelin T. Identification and characterization of DUSP27, a novel dual-specific protein phosphatase. FEBS Lett. 2007 May 29;581(13):2527-33. Epub 2007 Apr 30.