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Query: gi|15604722|ref|NP_219506.1| aspartyl/glutamyl-tRNA amidotransferase subunit B (CT004) [Chlamydia trachomatis D/UW-3/CX], from C.trachomatis

Results of FFAS03 search in H.sapiens
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MGIAHTEWESVIGLEVHVELNTESKLFSPARNHFGDEPNTNISPVCTGMPGSLPVLNKDAVRKAVLFGCAVEGDVALFSRFDRKSYFYPDSPRNFQITQYEHPIVRGGCIRAVVEGEEKTFELAQTHLEDDAGMLKHFGDFAGVDYNRAGVPLIEIVSKPCMFSAEDAVAYANALVSILGYIGISDCNMEEGSIRFDVNISVRPRGSRELRNKVEIKNMNSFTFMAQALEAEKRRQIEEYLSYPNEDPKKVVPAATYRWDPEKKKTVLMRLKERAEDYMYFVEPDLPVLQITETYIDEVRQTLPELPHSKYMRYITDFDIAEDLAMILVGDRHTAHFFETATMSCKNYRALSNWITVEFAGRCKARGKTLPFTGILPEWVAQLVNFIDRGVITGKIAKEIADRMVSSFGESPEDILRRHPSLLPMTDDHALRAIVKEVVAQNTASVADYKNGKAKALGFLVGQIMKRTEGKAPPKRVNELLLAAMRDMLast
1 -142.000sp|O75879|GATB_HUMAN Probable glutamyl-tRNA(Gln) amidotransferase subunit B, mitochondrial OS=Homo sapiens GN=PET112L PE=1 SV=1  ali follow..  30  56TRKGEHKWAAVVGLEIHAQISSNSKLFSGSQVRFSAPPNSLVSFFDASLPGTLPVLNRRCVEAAVMTGLALNCHINKKSLFDRKHYFYADLPAGYQITQQRLPIAVNGSLIYGVCAGPKTVRIKQIQLEQDSGKSLHDRSQTLIDLNRAGVGLLEVVLEPDMSCGEEAATAVRELQLILQALGTSQANMAEGQLRVDANISVHHPGEP-LGVRTEVKNLNSIRFLAKAIDYEIQRQINELENGGE------ILNETRSFHHKLGCTMSMRDKEGKQDYRFMPEPNLPPLVLYDATSLPAGADPQELPSVTREKLVQQYGMLLEHSFTLLNEVGLLEFFQNVIKETAEPKKVTSWVLNTFLGYLKQQNLAVSESPVTPSALAELLDLLDSRTISSSAAKQVFEELWKREGK-TPGQIVSEKQLELMQDQGALEQLCHSVMEAHPQVVMDVKNRNPRAINKLIGLVRKATQSRADPVMIKEILEKKLS.. 556
2 -5.400sp|Q6YHK3|CD109_HUMAN(removed signalp:1-21) CD109 antigen OS=Homo sapiens GN=CD109 PE=1 SV=2  ali   10  2...................................................................................................................DTHNRLLLQTAELAVVQPTAVN------ISANGFGFAICQLNVVYNVKASGSSRRRRSIQNQEAFDLDVAVKENKDDLNHVDLNVCTSFSGPGRSGMALEVNLLSGFMVPSEAISLSETVKKVEYDHGKLNLYLDSVNETQFCVNIPAVRNFKVSNTQDASDY-YEPR............................................................................................................................................................................................................. 167
3 -5.290sp|Q9NUJ3|T11L1_HUMAN T-complex protein 11-like protein 1 OS=Homo sapiens GN=TCP11L1 PE=1 SV=1  ali follow..  11  53.................................................PHSSPPRFVTVEELLETARGVTNMALAHEIVVNGDFQIKPVELPENSLKKRVKEIVHKAFWDCLSVQLSEEIKETLLSFLLPGHTRLRNQITEVLD--------LDLIKQEAENGALDISKLAEFIIGMMGTL-ARDEEVKKLKDIKEIVPLFREIFSVLDLMKVDMANISSIR-MQQSVEYERKKFQEILERQPNS------LDFVTQWLEEASEDLMTQKYKHALPVG-FPE----TVLMDQSRFHELQLQLEQLTILGAVLLVTFSMAAPGISSQADFAEKLKMIVKILLTDMHLPSFHLK-IGEKVCLEVSSCLSLCGSSPFTTDKETVLKGQIQAVASPDDPIRRIMESRILTFLETYLASGHQKPLPTVPGGLSPVQRELEEVAIKFARLVNYNKMVFCPYYDAILSKILVRS.................... 509
4 -5.270sp|Q6PCB8|EMB_HUMAN(removed signalp:1-32) Embigin OS=Homo sapiens GN=EMB PE=1 SV=1  ali follow..  8  4....................APDSPFTSPPLREEIMANNFSLESHNISLTEHSSMPVEKNITLERPSNVNLTCQFTTSGDLNAVNVTW---------KKDGEQLENNYLVSATGSTLYTQYRFTIIN-SKQMGS------YSCFFREEKEQRGTFNFKVPELHGKNKPLISYVGDSTVLTKLKITQLLEEDESYWCRALFQL---GESEEHIELVVLVAEVILLVATILLCEKYTQKKKKHSDEGKEFEQIEQLKSDDSNGIENNVPRHRKNESL..................................................................................................................................................................................................................... 293
5 -5.240sp|Q9BU70|NAP1_HUMAN Nef-associated protein 1 OS=Homo sapiens GN=C9orf156 PE=1 SV=2  ali follow..  11  33...........VGY-LESCFSAKN-----------------------GTPPSICSYSRACLRIRKRIFNNPEHSLMGLEQFSH--FVFHKNGHLSCKAKVQPPRLNGGVFSTRSPHRPNAIGLTLAKLEKVEGGAIYLSGIDMIH----GTPVLDI--KP-----------------------IAEYDSPQNVMEPLADFNLQNNQHTPNTVSQSDSKTDSCDQRQLSGCDEPQPHHSTKRKPKCPEDRTSEENYLTHSDTARIQQAFPMHREIAVDFG--LESRRDQSSSVAEEQIGPYCPEKSFSEKGTDKKLERVEGAAVLQGSRAETQPMAPHCPAGRADGAPRSVVPAWVTEAPVATL--------EVRFTPHAEMDLGQLSSQDV--------------------------GQASFKYFQSAEEAKRAIEAVLSADPRSVYRRKLCQDRLFYFTVDIAHVTCWFGDGFAEVLRI........ 420
6 -5.090sp|Q2M3G0|ABCB5_HUMAN ATP-binding cassette sub-family B member 5 OS=Homo sapiens GN=ABCB5 PE=1 SV=3  ali   15  19..............................................IGVVSQEPVLFGTTISNNIKYGRVTDEEMERAAREANAYDFIMEFPNKFNTLVGEKGAQMSG-------GQKQRIAIARA-----------------------------LVRNPKILILDEATSALDSESKSAVQAALEKASKGRTTIVVAHRLST-------------IRSADLIVTLKDGMLAEKGAHAELMAKRG.................................................................................................................................................................................................................................................... 169
7 -4.980sp|Q8IWX9|TRML3_HUMAN Trem-like transcript 3 protein OS=Homo sapiens GN=TREML3 PE=2 SV=2  ali follow..  7  3......................................NRTENTRPLFRMNRHIRTVAGTARSAKSKTLFLQCQYSPKRGSYQPKSWCQQTSPS---SSKPQTAVQKSHYTIWDKPNASIFKITMIQLKEDSGSYIYNTSKNIITVLRD----VSLVVFAAPTTSPTWTL.............................................................................................................................................................................................................................................................................................................................. 137
8 -4.890sp|Q8N4U5|T11L2_HUMAN T-complex protein 11-like protein 2 OS=Homo sapiens GN=TCP11L2 PE=2 SV=1  ali follow..  11  52.................................................ASTSPPRVVTFDEVMATARNLSNLTLAHEIAVNENFQLKQEALPEKSLAGRVKHIVHQAFWDVLDSELNEEIREILLSFLTPGGNRLRNQICEVLD--------TDLIRQQAEHSAVDIQGLANYVISTMGKL-VRDNDIRELKATGNIVEVLRQIFHVLDLMQMDMANIMSLR-QRQLVEYERTKFQEILEETPSA------LDQTTEWIKESVNEELFSLSESALT-KELPE----TLMTDGARLQELTEKLNQLKIIACLSLITNNMVGAITGGLPELASRLTRISAVLLEGMFNLKEVLNSIGIQTCVEVNKTLMERGLPTLNAEIQANLIGQFSSIEEEDNPIWSLIDKRIKLLPSPQKCMPPMPGGLAVIQQEEALGSQYANIVNLNKQVYGPFYAN-------ILRKLLFNEEAMGKVD............. 513
9 -4.870sp|P08183|MDR1_HUMAN Multidrug resistance protein 1 OS=Homo sapiens GN=ABCB1 PE=1 SV=3  ali   13  20..............................................IGVVSQEPVLFATTIAENIRYGRVTMDEIEKAVKEANAYDFIMKLPHKFDTLVGERGAQLSG-------GQKQRIAIARA-----------------------------LVRNPKILLLDEATSALDTESEAVVQVALDKARKGRTTIVIAHRLST-------------VRNADVIAGFDDGVIVEKGNHDELMKEKG.................................................................................................................................................................................................................................................... 170
10 -4.800sp|Q8TF76|HASP_HUMAN Serine/threonine-protein kinase haspin OS=Homo sapiens GN=GSG2 PE=1 SV=3  ali   9  2..............................................................................................................................................VLEFEFGGIDLEQMRTK--LSSLATAKSILHQLTASLAVAE-ASLRFEHRDLHWG-NVLLKKTSLKKLHYTLNGKSIPSCGLQVSIIDYTLSRLE--RDGIVVFCDVSMDEDLFTGDGDYQFDIYRLMKKENNNRWGYHPYSNVLWLHYLTDKMLKQMTFKTKCNTPAMKQIKRKIQEFHRTMLNFSSATDLLSLFK..................................................................................................................................................... 198
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 4 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;