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Query: gi|15604726|ref|NP_219510.1| ribonuclease HIII (CT008) [Chlamydia trachomatis D/UW-3/CX], from C.trachomatis

Results of FFAS03 search in H.sapiens
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MPSSFVSQLSPSLFSILREQLEKKGFTISIPPHTVFQGRSPTVSCTVYQSGKIVVQGKGTQEFVEFFLEPEILQTFSSQNVQQDLRSRIGVDESGKGDFFGPLCTAGVYASSPQAIEALYKTSICDSKLIPDAKILSLAQNIRSLCACKVITLFPEKYNALYANFQNLNSLLAWTHATIIDNLAPHPAGAVFAISDQFASSERVLLQAVRKKCSDIELIQRHRAEQDVVVAAASILAREAFLSSIHALESQYQIRLLKGASGKVKQRAKEILHNKGQVVLEKVCKTHFKTFNEVLGSGNQLast
1 -57.900sp|O75792|RNH2A_HUMAN Ribonuclease H2 subunit A OS=Homo sapiens GN=RNASEH2A PE=1 SV=2  ali follow..  17  4.............................................................SELERDNTGRCRLSSPVPAVCRKEPCVLGVDEAGRGPVLGPMVYAICYCPLPR-LADLEALKVADSKTLLESERERLFAKMEDTVGWALDVLSPNLISTLGRVKYNLNSLSHDTATGLIQYALDQGVNVTQVFVDTVGMPETYQARLQQSFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKKWQFVEDLDTDYGSGYPNDPKTKAWLKEHPVFGFPQFVRFSWRTAQTILEKEAE 250
2 -6.510sp|Q9H330|CI005_HUMAN Transmembrane protein C9orf5 OS=Homo sapiens GN=C9orf5 PE=1 SV=2  ali   12  60.....................................................................................AVAGGAYYLGEGAIIGPILLCILVVASNIYSAMLVSPTNSVPTPNQTPWPAQPQRTFRDISERSEIFSKVDVVSS............................................................................................................................................ 135
3 -6.180sp|Q9BZL6|KPCD2_HUMAN Serine/threonine-protein kinase D2 OS=Homo sapiens GN=PRKD2 PE=1 SV=2  ali   17  255...........................................................................................EVLGSGQF------GVVYGGKHRKTGRDVAVKVIDKLRFPTKQESQLRNEVA............................................................................................................................................................. 300
4 -6.050sp|Q8N7U6|EFHB_HUMAN EF-hand domain-containing family member B OS=Homo sapiens GN=EFHB PE=2 SV=4  ali   145...........................................................................................EEGSAYSLLYP--------------TIFARKGVFERDFFKTRSKEEIAEILCNI-----VKLSDEEFENVWNLASKKHEVCVENIRNVLDELRHADRIKCKTLM......................................................................................................... 233
5 -5.910sp|Q9NR31|SAR1A_HUMAN GTP-binding protein SAR1a OS=Homo sapiens GN=SAR1A PE=1 SV=1  ali follow..  12  30.......................................................................................FLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMT--GHEQARRVWKNYLPAINGIVFLVDCADHSRLVESKVELNALMTDETISNVPIL---------ILGNKIDRTDAISEEKLREIFGLYGQTTGKGNARPMEVFMCSVLKRQGYGEGFRWLSQYID............................................... 198
6 -5.830sp|Q9Y6B6|SAR1B_HUMAN GTP-binding protein SAR1b OS=Homo sapiens GN=SAR1B PE=1 SV=1  ali follow..  11  30.......................................................................................FLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMT--GHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMF--GLYGQTTGKGSISLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYID............................................... 198
7 -5.760sp|Q969Q4|ARL11_HUMAN ADP-ribosylation factor-like protein 11 OS=Homo sapiens GN=ARL11 PE=1 SV=1  ali follow..  12  17.......................................................................................MMGLDSAGKTTLLYKLKGHQLVETLPTVGFNVEPLKAPGHVSLTQAPLRASWKDYLEGTDILVYVLDSTDEARLPESAAELTEVLNDPNMAGVPFL-----------------------------------VLANKQEAPDALPLLKIRNRLSLERFQDHCWELRGCSALTGEG....................................... 161
8 -5.630sp|Q9Y4G8|RPGF2_HUMAN Rap guanine nucleotide exchange factor 2 OS=Homo sapiens GN=RAPGEF2 PE=1 SV=1  ali   11  119.........TDDDIEQLLEFMHQLPAFANMTMSVRRELCAVMVFAVVERAGTIVLDGEELDSWSVILNGSVEVTYPDGK-----------AEILCMGNSFGVSPTKGVMRTKVDDCQFVC-IAQQDYCRILNQVEKNMQKVEEEGEIVMVKEHRELDRTGT----RKGHIVIKGTSERLTMHLVEEHSVVDPTFIEDF...................................................................................................... 298
9 -5.630sp|Q96GR2|ACBG1_HUMAN Long-chain-fatty-acid--CoA ligase ACSBG1 OS=Homo sapiens GN=ACSBG1 PE=1 SV=2  ali   13  57.......................................................................................LVNQDAEGIGEICGRTIFMGYLNMEDKTCEAIDEEGTGDAGRLDADGFLYITGRLKELIITA---VPPVPIEEAVKMELPIISNAMLIFLSMLLTLKCTLDPDTSDQTDNLTEQAMEFCQRVGSRATTVSEIIEKKDEAVYQAIEEGIAARPYHIQKWAILERDFSIS--GGELGPTMKLKRLTVLEKYKGIIDSFYQ............... 270
10 -5.620sp|Q8TEU7|RPGF6_HUMAN Rap guanine nucleotide exchange factor 6 OS=Homo sapiens GN=RAPGEF6 PE=1 SV=2  ali   11  105CLEKEPADKTDDDIEQLLEFMHQLPAFANMTMSVRRELCSVMIFEVVEQAGAIILDGQELDSWYVILNGTVEISHPDGK-----------VENLFMGNSFGITPTHGIVRTKVDDCQFVC-IAQQDYWRILNHVEKNTHKVEEEGEIVMVHEHRELDRSGT----RKGHIVIKATPERLIMHLIEEHSIVDPTYIEDFLLTYRTF............................................................................................... 300

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Wooley JC, Godzik A. Probing metagenomics by rapid cluster analysis of very large datasets. PLoS ONE. 2008;3(10):e3375. Epub 2008 Oct 10.