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Query: gi|15604727|ref|NP_219511.1| HTH transcriptional regulator (CT009) [Chlamydia trachomatis D/UW-3/CX], from C.trachomatis

Results of FFAS03 search in H.sapiens
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSEHVHKELLHLGEVFRSQREERALSLKDVEAATSIRLSALEAIEAGHLGKLISPVYAQGFMKKYAAFLDMDGDRLLKEHPYVLKIFQEFSDQNMDMLLDLESMGGRNSPEKAIRSWLNLGWAGVFVVGAACIWWLGNLFNLFLast
1 -14.300sp|O60869|EDF1_HUMAN Endothelial differentiation-related factor 1 OS=Homo sapiens GN=EDF1 PE=1 SV=1  ali follow..  15  69...HHDRVTLEVGKVIQQGRQSKGLTQKDLATKINEKPQVIADYESGR--AIPN-----QVLGKIERAIGLKLRGKDI................................................................. 137
2 -8.710sp|Q9UBX2|DUX4_HUMAN Double homeobox protein 4 OS=Homo sapiens GN=DUX4 PE=2 SV=2  ali follow..  10  1MALPTPSDSTLPAEARGRGRRRR----------LVWTPSQSEALRA--FERYPG-IATR---ERLAQAIGIPEPRVQIWFQNERSRQLRQHRRESRPWPGRRGPPEGRRKRTAVTG........................... 103
3 -7.800sp|O95684|FR1OP_HUMAN FGFR1 oncogene partner OS=Homo sapiens GN=FGFR1OP PE=1 SV=1  ali follow..  13  1MAATAAAEDTELRDLLVQTLENSGV-LNRIK--AELRAAVFLALEEQEFLNTKDGRLVASLVAEFLQFFNLD---TLAVFQPETSTLQG...................................................... 103
4 -7.680sp|Q86WR6|CQ064_HUMAN Uncharacterized protein C17orf64 OS=Homo sapiens GN=C17orf64 PE=2 SV=2  ali follow..  10  50..KTCKEYLRPLKKFLRKLHLPRDLPQKKKLKYMK---QSLVVLQAWEIKHWRKMLWR--FISLFSE---LEAKQLRRLYKYTKSSQPAKFLVTFCASDAPERSLLADREDS............................... 163
5 -7.540sp|Q9Y6V0|PCLO_HUMAN Protein piccolo OS=Homo sapiens GN=PCLO PE=1 SV=3  ali   242.CFETTSVMGEIKIALKKEMKTDGEQL-EILQCRNITYKFKSP------DHLP-DLYVKIYVMNIS............................................................................. 300
6 -7.440sp|Q9UPQ3|AGAP1_HUMAN Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 1 OS=Homo sapiens GN=AGAP1 PE=1 SV=4  ali   11  3......QTVYHYYSRMANYRNTSEIPLVLVGTQDAISSANPRVIDDARARKLSNDLKRCTYYETCATY-GLNVERVFQDVAQKIVATRKKQQLSIGPCKSLPNSPSHSSV................................. 105
7 -7.300sp|Q13905|RPGF1_HUMAN Rap guanine nucleotide exchange factor 1 OS=Homo sapiens GN=RAPGEF1 PE=1 SV=3  ali   13  206LESAQSEEEVDELSLIDHNEIMSRLTLKQ-DDGPDVRGGSGDILHATETDRKDLVLYCEAFLTTYRTFIS---KKLQYRYE.............................................................. 291
8 -7.300sp|Q5TEA3|CT194_HUMAN Uncharacterized protein C20orf194 OS=Homo sapiens GN=C20orf194 PE=2 SV=1  ali   13  158.SGQQECYLVFIGCSLKEDSIKDWLQRKALKTRGMLTQQEIRSIHVKHLEPLPAGYFYNG--TQFVNFFG-LMDQFMNDYVEEANREIEKYNQELEQQEYHD......................................... 271
9 -7.160sp|Q9UP95|S12A4_HUMAN Solute carrier family 12 member 4 OS=Homo sapiens GN=SLC12A4 PE=1 SV=2  ali   13  115.NVRRMHTAVKLNEVIVTRSHDARLNMPGPPRNSEGDENYMEFLEV---EGLERVLLVRGVITIYS............................................................................. 185
10 -7.060sp|Q96P47|AGAP3_HUMAN Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 3 OS=Homo sapiens GN=AGAP3 PE=1 SV=2  ali   10  18.DEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATY-GLNVERVFQDVAQKVVALRKKQQLAIGPCKSLPNSPSHSAVS................................ 126

FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 2 8 5   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. Discovering new genes with advanced homology detection. Trends Biotechnol. 2002 Aug;20(8):315-6.