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Query: gi|15604718|ref|NP_219502.1| hypothetical protein (CT875) [Chlamydia trachomatis D/UW-3/CX], from C.trachomatis

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSIRGVGGNGNSRIPSHNGDGSNRRSQNTKGNNKVEDRVCSLYSSRSNENRESPYAVVDVSSMIESTPTSGETTRASRGVFSRFQRGLVRVADKVRRAVQCAWSSVSTRRSSATRAAESGSSSRTARGASSGYREYSPSAARGLRLMFTDFWRTRVLRQTSPMAGVFGNLDVNEARLMAAYTSECADHLEANKLAGPDGVAAAREIAKRWEQRVRDLQDKGAARKLLNDPLGRRTPNYQSKNPGEYTVGNSMFYDGPQVANLQNVDTGFWLDMSNLSDVVLSREIQTGLRARATLEESMPMLENLEERFRRLQETCDAARTEIEESGWTRESASRMEGDEAQGPSRAQQAFQSFVNECNSIEFSFGSFGEHVRVLCARVSRGLAAAGEAIRRCFSCCKGSTHRYAPRDDLSPEGASLAETLARFADDMGIERGADGTYDIPLVDDWRRGVPSIEGEGSDSIYEIMMPIYEVMDMDLETRRSFAVQQGHYQDPRASDYDLPRASDYDLPRSPYPTPPLPPRYQLQNMDVEAGFREAVYASFVAGMYNYVVTQPQERIPNSQQVEGILRDMLTNGSQTFRDLMRRWNREVDRELast
1 -4.320HGC00593 gi|162858151|dbj|BABB01011554.1|1.0 TMP00709;  ali follow..  17  1..........................................................................................................................................................................................................................................................................................................MDMTDNNDDVL--VKKFFSENRIDVPDDGFSRRVMRRL-------PDRTRRISRLWTAVCVVIGLLIFFRNKGFSVLVSCFDG.................................................................................................................................................................................................................. 74
2 -3.720HGC00485 gi|163636056|dbj|BABG01000217.1|3.0 TMP00523;  ali follow..  21  19........................................................................................................AVNAQRSQLLTVMADAVS--ECRTAADQAAELNETGQVGL-LRLAEVWSA--IRAKEGMGGLI--LEGTEAKILSDVVAQFYAYLSGCMFNDPVGMAIYAELHYMMSS........................................................................................................................................................................................................................................................................................................................................................................................... 119
3 -2.620PB008694 Q9F6U1_BACTN/1-190 PB008694; Pfam-B_8694;  ali follow..  19  5.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................SVPKSIWRTPPRKRR------------------RFTVWRRSWAATSPSGNLPKSGETRKTIKNEFINEKRKMRMNLPK........ 70
4 -2.510HGC00991 gi|163600283|dbj|BABF01000984.1|3.0 TMP01348;  ali follow..  9  7.....................................................................................................................................................................................................................................................................................................LINLKLWGYITMKKMIAYCGLDCEKCDAYIATINDNQELRKKTAKLWAELNNAPILPEHINCQGCRVDGIKTVFCDNMCGIRQCALEKGVATCGD----CLERCP................................................................................................................................................................................................. 109
5 -2.380HGC00166 gi|163579340|dbj|BABE01005762.1|1.0 TMP00473;  ali follow..  11  2.................................KEHKEVSALLQQAKQERRCCYGTSDAQRRALKRRLHAGELVSPYKNLYADRTL---QSLQVIRALSAIHPQWVFAGLSAAIASKSGIGGGDEARLNRIYINRIPTRKHNGILL--TTPARTLLDCAVFPFPQALPIYDSALRKSLTT-----IEEVQSLMIQSVCDEVSVTKLLKYANPLSENGGESLMRGQITE--LSFGSSCWQCSS............................................................................................................................................................................................................................................................................................................................................................. 223
6 -2.300PB006791 A6TXD6_9CLOT/1-181 PB006791; Pfam-B_6791;  ali follow..  11  8................................................................................................................................................................................................................................................................................VEMYGTYFILGSFLLNLLLVLLLIIYNTTTSNLKDKYKRLVKGTDGKNIE--------------------------SVLMQHIEKVEEAQVEVEKVHKRLDIINNRMSFCIQKVGMVRYNAFADMGSDLSYSYALLDENNNGMIITGIYGRSETVTYAKPVKDGKSNYSLSVEELQALQRAKENTIDT................................................................................................................................... 169
7 -2.050PB033130 gi|160880323|ref|YP_001559291.1| transglutaminase domain protein [Clostridium phytofermentans ISDg]gi|160428989|gb|ABX42552.1| transglutaminase domain protein [Clostridium phytofermentans ISDg]  ali follow..  12  1..........................................................................................................................................................................................................................................................................................................................................................................................................................PVCGAKVSLEILNYAE-TELYTDEKGCVSITI------------GLGDIHIRAVKDGFFAEAMGHVRTQEEITLILNDNLLSKDWVTDSWEMCEVEAPKDSVKYQFNLTREQQATNRSKLREAKLLRENRIESYYD------EALAENVPDAKEILHLAKGNFMEIYRFLTVDGNNVDSNQ 166
8 -1.890PB009534 gi|153852721|ref|ZP_01994158.1| hypothetical protein DORLON_00140 [Dorea longicatena DSM 13814]gi|149754363|gb|EDM64294.1| hypothetical protein DORLON_00140 [Dorea longicatena DSM 13814]  ali follow..  12  22..................GDVLKIECVNPAMLARIRSHLLTFHHPDNKRERRVVMSVLKVIQKIHEIYPE-EEQDGKGGVIHVAKIVMVVMISFFGAAFSTMAFNNDVGVTKMFGQIYELLTGTKSNGFTILEFMYCIGIIIGILTFFNHFGKKRLSVDPTPMEVEMRLYENDIQTTLVETYSRKEKELD................................................................................................................................................................................................................................................................................................................................................................................................................. 208
9 -1.870PB001823 Q5L7Q9_BACFN/1-326 PB001823; Pfam-B_1823;  ali follow..  11  107..........................................................................................................................................................................................................................................AIMFEDTQNGDY----------------------------DYNDLIIHVKNTASNHAY-----------------QHPTETWQTIEIQPIALGSTKTIKLGCILSDGSTHMISDDVRTDLFGGRQSTNIKNYAMPKKEKTSAAWVAWFIEVDGKRMYAASSDIDYKSYDMVNKENM-PYGLAVSNGNGTFSEKNSLFET----Y--PGFSDWINGKELVYKYCSGGIIGEDGKSHKIWDLDL................................................................................................................... 326
10 -1.830HGC00106 gi|162841414|dbj|BABA01003295.1|1.0 TMP01000;  ali follow..  20  3...................DGDFVKLSNLT-RNNKYMKSLRVYVSGNNLFCITGYSGLDPELDISNVQAPGVEYRDTYPTTRSFTFGV....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 77
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Rychlewski L, Zhang B, Godzik A. Functional insights from structural predictions: analysis of the Escherichia coli genome. Protein Sci. 1999 Mar;8(3):614-24.