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Query: gi|15604719|ref|NP_219503.1| hypothetical protein (CT001) [Chlamydia trachomatis D/UW-3/CX], from C.trachomatis

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90
# Score Template Links and tools%idFirst MLCKVCRGLSSLIVVLGAINTGILGVTGYKVNLLTHLLGEGTMWTQAAYVVTGIAGVMVCLNFLKCCFKKRHGDCCSSKGGYHHHHMDRELast
1 -3.940HGC01215 gi|162843249|dbj|BABA01001460.1|3.0 TMP01713;  ali follow..  13  3.....................GVFCVEGFSVDVF------------IVHIREICFPVLFFCHFSVSDTFANKAASGGN............ 47
2 -3.930PB038151 Q8A4A5_BACTN/1-178 PB038151; Pfam-B_38151;  ali follow..  15  29........ISCVMLLIGILSFASTFELEDKSSTVSMAL----MVFGTGLFLLGIFRLF................................ 74
3 -3.830PB053244 _HOMD.0087087_ pint_c_2_2642 Prevotella intermedia 17 [158005 - 157583] (REVERSE SENSE) ORF  ali follow..  8  1...SIVYAIGGLLMAVGTG---LIGAICFATMQMRQQYLGTNLTIRRLRKIMVLADIGFIL............................. 70
4 -3.570PB006154 _JGI.0331794_ 2004021056 [Human Gut Community Subject 7]  ali follow..  14  10.........................LTKVKSKVMFNL-----TKRQLICFGMAVLIGVPSFFLMK......................... 44
5 -3.520PB062605 Q9F6T7_BACTN/1-105 PB062605; Pfam-B_62605;  ali follow..  15  3......RKVKSIRKTMWGVYWKLHDKRKRLVERLKGYLDGLPPETCRRIVLGMLAAFAVLALYTFGRAAYDIGRNDGSRMETGH...... 80
6 -3.290PB023890 Q7MUU3_PORGI/1-263 PB023890; Pfam-B_23890;  ali follow..  9  9....................WGRFGLLLFACPIIFASIMKKEFIGRTAKSLSLALAIFSGCIFG.......................... 54
7 -3.170HGC00928 gi|162868028|dbj|BABB01001979.1|3.0 TMP01255;  ali follow..  14  129...........IMGCIGTILFIGIPIFSLIYAICSQLFKIRPLPTQARWILLALWLISFIL............................. 178
8 -3.090PB027498 Q7MTK6_PORGI/1-146 PB027498; Pfam-B_27498;  ali follow..  2  1...........................................MSNILILIIGVLVLGLVAALTEIRHSHKRRAAEAKGESLPEE..... 42
9 -2.910PB002104 Q72PH8_LEPIC/1-220 PB002104; Pfam-B_2104;  ali follow..  11  21MQQNKFRKAIVAILMPMILVVSFGNCFG-KFAIVKKVYEVNDGFNI-LYFVGFFFDLILF.............................. 98
10 -2.830HGC00522 gi|163636101|dbj|BABG01000172.1|3.0 TMP00580;  ali follow..  13  32.IIQIWEDAGAKINLVGSLRTGLL-MKHRDIDFH--IYSSPLNLTDSFQAMARLAE.................................. 83
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 4 7 1   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Rychlewski L, Zhang B, Godzik A. Functional insights from structural predictions: analysis of the Escherichia coli genome. Protein Sci. 1999 Mar;8(3):614-24.