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Query: gi|15604721|ref|NP_219505.1| aspartyl/glutamyl-tRNA amidotransferase subunit A (CT003) [Chlamydia trachomatis D/UW-3/CX], from C.trachomatis

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MYRKSALELRDAVVNRELSVTAITEYFYHRIESHDEQIGAFLSLCKERALLRASRIDDKLAKGDPIGLLAGIPIGVKDNIHITGVKTTCASKMLENFVAPFDSTVVRRIEMEDGILLGKLNMDEFAMGSTTRYSAFHPTNNPWDLERVPGGSSGGSAAAVSARFCPIALGSDTGGSIRQPAAFCGVVGFKPSYGAVSRYGLVAFGSSLDQIGPLTTVVEDVALAMDAFAGRDPKDSTTRDFFKGTFSQALSLEVPKLIGVPRGFLDGLQEDCKENFFEALAVMEREGSRIIDVDLSVLKHAVPVYYIVASAEAATNLARFDGVRYGHRCAQADNMHEMYARSRKEGFGKEVTRRILLGNYVLSAERQNIFYKKGMAVRARLIDAFQAAFERCDVIAMPVCATPAIRDQDVLDPVSLYLQDVYTVAVNLAYLPAISVPSGLSKEGLPLGVQFIGERGSDQQICQVGYSFQEHSQIKQLYPKAVNGLFDGGIELast
1 -2.240HGC00024 gi|162813637|dbj|BABA01031072.1|2.0 TMP01508;  ali follow..  113........................GNAYTQIAKYNTFLENITDCPMEESKKEQWSAEVKCLRAYFFLNL-DVPMPLKTLSVDEAISQTPQTEVYSQVEKDLKT-AIDLLPVHYLRGIWRLP.................................................................................................................................................................................................................................................................................................................................................................................. 214
2 -2.110HGC00993 gi|163626727|dbj|BABG01009540.1|1.0 TMP01352;  ali follow..  12  29.....IASAADSLAFYSSHQEELAR--LKRIRKLHQKVATLITESALSDEEYGSDGREDFSRGDNRGFYHGVSPGESER--------------LMDYFYPEDTRTMFLRKEEQMLQHDKKNNKTSSTNKK......................................................................................................................................................................................................................................................................................................................................................................... 144
3 -1.710HGC00166 gi|163579340|dbj|BABE01005762.1|1.0 TMP00473;  ali follow..  27...AQRRALKRRLHAGELVSPYADRTLWNTMTREQQSLQV--------IRALSAIHPQWVFAGLSAACVYGLQHNRIPTRKHNGILLTTPARTLLD-FPFPQALPI----YDSALRKSLTTIEEVQSLMIQSVCDEVSVTK--NPLSENGGESLMRGQITELSFGSSCWQCSS.............................................................................................................................................................................................................................................................................................................................. 223
4 -1.460HGC00787 gi|162657578|dbj|BAAX01002027.1|2.0 TMP01033;  ali follow..  4............................TSPIQALLQQRTLLQIEYYTEKEAFRKQTEQMGMQRKVK--RGDAWF---PLRIGKSFYNSLNQNAIEVFRTEDQDIEHNFEFGRPVMFFKAGETKTAQTDGKTEK-----------KMLKYFSFTGTVSYVDGDRMVITVPDSAPLL---------LQQADVPVGVQLSFDETSYKMMFDALDRTMKAKNNLAYLRDLFYSHRKAERYSFEPMRFPW..................................................................................................................................................................................................................................................... 198
5 -1.440PB003645 Q65HI2_BACLD/1-230 PB003645; Pfam-B_3645;  ali follow..  12  84......................................................................................KPASDDKPKESIQDYEQEYENQLKDILETIIGVEDVSIVVNVDATSLKIFEKNRKTQETSTNETDKQGGKRTVSEMSSDEEIVIIKNGDK-ETPVV---VQTKKPDI------GVLVVAQGVDNVQIKKTIIEAVTRVLDV........................................................................................................................................................................................................................................................................ 215
6 -1.350HGC00803 gi|163280588|dbj|BABD01030100.1|2.0 TMP01051;  ali follow..  17  40.....LQKVIDLLESGETDTEVIQETLDEAVCGINDLQEEFDENDSEIETVARDCIGVTV---AYILEWFGIPIDIEEAIRERD....................................................................................................................................................................................................................................................................................................................................................................................................................... 115
7 -1.280PB005684 gi|160884252|ref|ZP_02065255.1| hypothetical protein BACOVA_02230 [Bacteroides ovatus ATCC 8483]gi|156109991|gb|EDO11736.1| hypothetical protein BACOVA_02230 [Bacteroides ovatus ATCC 8483]  ali follow..  10  115.................VAPSASGKGILSYIRLLVEPIHDEIRKEVTIQMKAYKKEKAEYDAMGKERTKKEAPQMPPNRMFLISGNNTG-------------TGILQNIMDSGTGLICEAEADTLSTAIGSDHGHWSDTRKAFDHDRLSYNRRTDQEYREVKKSYLSVLISGT------PSQVQTFIPTAED-GSYSRQLYYYMCGISKWISQFMDNEIDWEEIFTAMGLEWKEKLSVIKTHGIHTLQLTDEQKEEIDTVFSDLFERSSVANGREMYSFVARLAVNLCRIMSE-VAVLRALESPQPYDFKTSPTSPFTPDKEIPTDNRKDDIITRWDVSISQEDFHAVLSLAEPLY-ATHILSFLPNTEISHRPNADRDYLFQKLGDEFTRTQLL---EAVAMGIKENTALTWLKRLTKHGKLISMDGKGL............................................................ 508
8 -1.210PB012386 gi|82541244|ref|XP_724876.1| blood-stage membrane protein Ag-1 [Plasmodium yoelii yoelii str. 17XNL]gi|23479680|gb|EAA16441.1| blood-stage membrane protein Ag-1 [Plasmodium yoelii yoelii]  ali follow..  12  12..........................................................................................................................................................................................IPIGTVFSFVSKYDYICNKAVQDISEDLIKIELNQNVSINKI------NILKASQASENTQNLRKKHAPIKVLINRKNFNLYQXXXXXXXXXXXXXXXXXXXXXXXXXXXXNFDTNESDKIKGDKNYYNSLENFEGYSY...................................................................................................................................................................... 145
9 -1.200PB031792 gi|154174791|ref|YP_001409041.1| flavodoxin family protein [Campylobacter curvus 525.92]gi|112804021|gb|EAU01365.1| flavodoxin family protein [Campylobacter curvus 525.92]  ali follow..  16...........................................................................IKEHVKGKKT-ITLGADPAGEHGESMLKVGRELLNEGGNEILAE.................................................................................................................................................................................................................................................................................................................................................................................... 61
10 -1.140PB001565 Q6LS01_PHOPR/1-384 PB001565; Pfam-B_1565;  ali follow..  16  79....SFEEALEYCKERNVNPYDIVKET-----AFENASWAYVAIALKEDAKNAAEAAEYIGQGLQA-----IPGSVADQRQVGLGHGRLAARLLNNFLAGHESVILNGLGKDAAYMIARINERRFSTSQRGDINCYGASTNPTRFQHPVAGTYKKERLEANQAYFSVASGGGTGRTLH-PASY----GMTDTMGRMHSDAQFAGSSSV........................................................................................................................................................................................................................................................................................... 353

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Slabinski L, Jaroszewski L, Rychlewski L, Wilson IA, Lesley SA, Godzik A. XtalPred: a web server for prediction of protein crystallizability. Bioinformatics. 2007 Dec 15;23(24):3403-5. Epub 2007 Oct 5.