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Query: gi|15604722|ref|NP_219506.1| aspartyl/glutamyl-tRNA amidotransferase subunit B (CT004) [Chlamydia trachomatis D/UW-3/CX], from C.trachomatis

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MGIAHTEWESVIGLEVHVELNTESKLFSPARNHFGDEPNTNISPVCTGMPGSLPVLNKDAVRKAVLFGCAVEGDVALFSRFDRKSYFYPDSPRNFQITQYEHPIVRGGCIRAVVEGEEKTFELAQTHLEDDAGMLKHFGDFAGVDYNRAGVPLIEIVSKPCMFSAEDAVAYANALVSILGYIGISDCNMEEGSIRFDVNISVRPRGSRELRNKVEIKNMNSFTFMAQALEAEKRRQIEEYLSYPNEDPKKVVPAATYRWDPEKKKTVLMRLKERAEDYMYFVEPDLPVLQITETYIDEVRQTLPELPHSKYMRYITDFDIAEDLAMILVGDRHTAHFFETATMSCKNYRALSNWITVEFAGRCKARGKTLPFTGILPEWVAQLVNFIDRGVITGKIAKEIADRMVSSFGESPEDILRRHPSLLPMTDDHALRAIVKEVVAQNTASVADYKNGKAKALGFLVGQIMKRTEGKAPPKRVNELLLAAMRDMLast
1 -2.340PB019279 Q5LE73_BACFN/1-147 PB019279; Pfam-B_19279;  ali follow..  14  3.....................................................................................................................................................................TLTFKYLKLFLLAVAMINLTSCEIEIDDFYDDDNIGSYYNKSLDLCSRPWADTFYD-NYCYQELNFYLDRHGEDYIRVEYPNGRYSESVYSFTWNWEDRSQYSLRMVYGPGDVSYLDDVWIRGNVLS.................................................................................................................................................................................................... 132
2 -2.270PB000790 _Gut.Meta.Jp.0111831_ gi|163310496|dbj|BABD01000203.1||3 (- 2591:4589~0 complete)  ali follow..  9  223.........................................................................................................................................GKARIYFAPWESYFLLAEAAEYGWISNITPKEAYELGIRSSFEYFGVSEYADQYINSTTRNRLGTSVAFDDTVEPTSEVMTYRDGYTNTDQIQEVVYNYPTASKTLYGKAMNDHLTK-TQKY-----AQMPYQVLEIWNDHRRLGLPFFEIPANESDLIGSDMVNV-FYP----QRMR--YPTTLDNAD--------PENYQKAVELLGGSDVIITW...................................................................................................................................... 436
3 -2.030HGC00518 gi|162728471|dbj|BAAY01000490.1|2.0 TMP00574;  ali follow..  10  14.........................................................................................................................................................LMLEDCEVCPKPSLPSAIHVDTGDFIAMIPFDMEEYQKQFKPVKKTLSI----PGWLNDAAESAHINFSSVLQKGLKSELG.............................................................................................................................................................................................................................................................. 90
4 -1.940HGC00164 gi|163636082|dbj|BABG01000191.1|4.0 TMP00833;  ali follow..  10  1.......................................................MNDLIVDVKLSVGSLYWEKESNAALFD---YERKFIRSGLDISPIIMPISQYGLFADSLPDTFGNQIINEWFASKGLSGEEITPLDRLCYVGKRGMGALEFEPSSPINGMNESSVLIEELTELAKSVFTDRMAFQVQLRQEGRNILD.............................................................................................................................................................................................................................................................................................. 167
5 -1.830PB015954 Q6WBB3_BIFBR/1-225 PB015954; Pfam-B_15954;  ali follow..  9  29.........................................................................................DYGRGFYCTR-SIELAKEWACAGLDDGFANRYTLTTDGLTFLDLSQPPYTILNWLAL---------LVENRRFQPTTAVAAQGIEYLRQVFLPDISQADVIVGYRADDSYFSFARTFVNNAISLDQLADAMRLGELGKQIVLISSRAFAALQQDCEIARASTYHVLRNERDVTAREAYRRKSAEADIDGLFMRD............................................................................................................................................................................................................. 213
6 -1.810HGC00166 gi|163579340|dbj|BABE01005762.1|1.0 TMP00473;  ali follow..  10  119......................................................................................................................NRIYINRIPTRKHNGILLTTPARTLLDCAVQALPIYDSALRKSLTTIEEVQSLMVSVTKLLKYANPLSENGGESLMR----GQITELSFGSSCWQCS................................................................................................................................................................................................................................................................................. 222
7 -1.790HGC00870 gi|163286116|dbj|BABD01024572.1|2.0 TMP01154;  ali follow..  14  47...............................................................................................................................................VAKEDYVQPLGALAGVKDIPRIEETYEGDELSDTLFVFAFFSDNRLNQ---------ALRKSGAGTFPYKAILTPTNQNWNALQCFS-EIRREHETIQKQLKGNKEQA............................................................................................................................................................................................................................................. 147
8 -1.610PB001232 gi|126647001|ref|ZP_01719511.1| hypothetical protein ALPR1_19713 [Algoriphagus sp. PR1]gi|126577049|gb|EAZ81297.1| hypothetical protein ALPR1_19713 [Algoriphagus sp. PR1]  ali follow..  7  6......................................................................................FYQE-----KINEIISPLSRSARFTYEGTFFDQDVLVNKIKVTPRSRGERVFEGYIYIIEDLWAIHSLNLKTSLLGFQIQATQQY-HTYRXXXXXXXXX---ASTRDYEVTMNPDLAYVPEIIDEKVQEVPDEVAEFDKSESALEQLAKEQPTEYRKMINEYEKEAMKEREEPEVIRESYYSIDSLAKKRELSYWDSIRPVPLTEKEIEGYNRDDSLAVVEAAKVSE............................................................................................................................................................................... 248
9 -1.590PB064361 Q64PJ4_BACFR/1-580 PB064361; Pfam-B_64361;  ali follow..  9  1MKIERLFIYCLLAGTS---------LLASCNSEDMTDNPVETLS-----EGMYPLTFTAMQGEVVATPQTRVSDYDDTDGKHKSKWDGGE-----VIGVKIGTDGAVGSYTLDSDGKPTTS---------TSNIPAYWQSTASQTVY-GWYPNTADISLTGQDNTGNKFPYVLKGVSSKQYSYKENVQLNLEHQLVKFRVKLNGDVPNLSDAKVFFYGYPTCKNEYGTVIPQGDKTYLATRKVGDYYTAMLAPDTKTS-------NNFVKIEVYGLTYYYNPDIEL.......................................................................................................................................................................................................... 250
10 -1.580PB006791 A6TXD6_9CLOT/1-181 PB006791; Pfam-B_6791;  ali follow..  16  84.............................................................................................................INNRMSFCIQKVGMVRYNAFADMGSDLS--SYALLDENNNGMIITGI------YGRSETVTYAKPVKDGKSNYSLSV---ELQALQRAKENTIDTLELQGFRSKKEL................................................................................................................................................................................................................................................................................ 181
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Jaroszewski L, Godzik A. Tolerating some redundancy significantly speeds up clustering of large protein databases. Bioinformatics. 2002 Jan;18(1):77-82.