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Query: gi|15604723|ref|NP_219507.1| hypothetical protein (CT005) [Chlamydia trachomatis D/UW-3/CX], from C.trachomatis

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MTPVTPVPPQSPQQVKGLLSRFLTAPDRHPKLRYVYDIALIAISILCIVSIILWTQGSGLALFAIAPALAIGALGVTLLVSDLAESQKSKEIADTVAAVSLPFILTGTAAGLMFSAIAVGGGAVILANPLFLMGSMTLGFALMSLHRVTYQYLSNREQWKQQKKLEQVELAAWESHLPKESKSSALEEVRYSPRLMKRGKTWRKRAIRRKNYTPIPLVDKTLQTMQPDALFSSTTTHSTDSEQILTSVSPQSSDTESSSSSSFHTPPNSDKELSDSNSSDSSSSSEYMDALETVAAGDVSGITPPSKPSSSPKTTRRVVKLSRSERNAQHHRNKDQEQRQDSSESSEEDSSSDSSQKKKPSRKLast
1 -5.790PB053244 _HOMD.0087087_ pint_c_2_2642 Prevotella intermedia 17 [158005 - 157583] (REVERSE SENSE) ORF  ali follow..  15  1...........................................SIVYAIGGLLMAVGTGLYAFFIIQDVAVMLIGAICFATMQMRQQTIRRLRKIMVLADIGFIL---AGLFMVEDSYGFVKQYLANSIGGYTTYVNI-VVILLIATALEVYTLHRIDYLIEKE....................................................................................................................................................................................................... 130
2 -4.670HGC00690 gi|162868815|dbj|BABB01001192.1|3.0 TMP00870;  ali follow..  11  22.....................................VSAGVFAFVLVIGVVILRCSRIENIILIENVMICGVVAGNISTAYNLGFANMPKVPVSNICGNIIIAIYGLCVGIFVGCIAVALAEILHTFPIIIVISMAIGKALGALYYFLTGFVATS............................................................................................................................................................................................................... 158
3 -4.620PB032242 Q8FLW6_COREF/1-257 PB032242; Pfam-B_32242;  ali follow..  20  59..........................DLQITAGMVWVAFLAVAAIFGVLWFV----------LTYFPILGSAAMYQAFMIGNISN----KLVPAAIVAQSSIGAKAGSKRGDLAAVMAIGGAATMHL--SLLIFVGFLGTWLVSL.......................................................................................................................................................................................................................... 164
4 -4.490HGC00552 gi|162599220|dbj|BAAV01006262.1|2.0 TMP00636;  ali follow..  16  2...........................RKFNYKRLIVMLVVVLAITCLMATTAFAAGTGDVAGAVESTWSTASTQIKSVVDNVV------PAIDLILAV-FFFAKLGTAPAILFACL-----VFTLTAPMYLWSIIGI................................................................................................................................................................................................................................. 115
5 -4.200PB009534 gi|153852721|ref|ZP_01994158.1| hypothetical protein DORLON_00140 [Dorea longicatena DSM 13814]gi|149754363|gb|EDM64294.1| hypothetical protein DORLON_00140 [Dorea longicatena DSM 13814]  ali follow..  15  24VLKIECVNPAMLARIRSTHLLTFHHPDNKRERRVV-------MSVLKVIQKI-----------EIYPEASVENIGETDFIVTYEEQDGKGGVIHVAKIVMVVMISFGAAFSTMIYELLTGTKS---NGFTILEFMYCIGIIIGIL--TFFNHFGKKRLSVDPTPME..................................................................................................................................................................................................... 182
6 -4.070PB069407 _HOMD.0084606_ pint_c_2_12 Prevotella intermedia 17 [3585 - 4295] ORF  ali follow..  11  125...............................CYFVMVVLLITVLVLSFKLIA--NSEN---IFLMRNLKLIRIMAFSILAYYI-----------------IWWGITLVEVYFIQQSFSLAGQPIDIAGSLDFPNGLFEIPFIFIIYEI----FAIGVRMREENQL...................................................................................................................................................................................................... 235
7 -3.940PB000520 Q9RVX4_DEIRA/1-194 PB000520; Pfam-B_520;  ali follow..  16  1......................MRVPRR-PRLSGAVTLKRMPQPVTALLAAM------------ITPAVLISGAGTLIMST----STRVGRATDRVRGLT---FLMRALQAFYTSVALLVLTSILLG--VALGGSVSLAYGALLL-RYSAATTKEEMRFLEELGQHYAELYADE............................................................................................................................................................................................. 193
8 -3.930HGC00485 gi|163636056|dbj|BABG01000217.1|3.0 TMP00523;  ali follow..  20  27...................................................LLTVMADAVSECRTAADQA-GQVGLLRLAE-RAKEGMGGLILEGTEAKILSDVVAQFYAYLSGCMFNDPVGMAIYAELHYMMSSLMLGEWF............................................................................................................................................................................................................................. 126
9 -3.870HGC00593 gi|162858151|dbj|BABB01011554.1|1.0 TMP00709;  ali follow..  16  20.........RIDVPDDGFSRRVMRLPDRTRRISRLW-------TAVCVVI--------GLLIFFRNKGFSVLVSCFDGIFSDVLARHEQLNNPHLLLPVAMVLILLWGVGFAV.......................................................................................................................................................................................................................................................... 109
10 -3.680PB000119 Q6KIT1_MYCMO/1-381 PB000119; Pfam-B_119;  ali follow..  24  228....................RINTIPNPNPNEIFNFDLNNLPIELLTVEAI--WFLQSKMELTDTATVIIIN-FAVNYLKSELLGLFVEKFFKDDVEVFSLYFVVNNSTKNI-FSSV--GISSLSTNNPKLIF...................................................................................................................................................................................................................................... 372
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 1 0 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Godzik A. Fragnostic: walking through protein structure space. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W249-51.