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Query: gi|15604724|ref|NP_219508.1| hypothetical protein (CT006) [Chlamydia trachomatis D/UW-3/CX], from C.trachomatis

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MPSTVAPIKGQDHFLNLVFPERVAAAYMSPLAQKYPKAALSIASLAGFLLGILKLITFPVLCAAGLFVFPIRGLISCLFHKSFQGCSGYVLATFLSLFSLALTIVGIVSCITWAPGFIFPMISVSIAFATVETCFQIYTHLFPALEHKPSSSLKIEIAAAKLPRSSSAPDLNYPSLPTQSASPSQRFSALast
1 -5.350PB009534 gi|153852721|ref|ZP_01994158.1| hypothetical protein DORLON_00140 [Dorea longicatena DSM 13814]gi|149754363|gb|EDM64294.1| hypothetical protein DORLON_00140 [Dorea longicatena DSM 13814]  ali follow..  8  115......................................................................................AAFSTMAFNNDVGVTKMFGQIYELLTGTKSNGFTILEFMYCIGIIIGILTFFNHFGKKRLSVDPTPMEVEM................................ 185
2 -4.760PB001708 Q3IRP6_NATPD/1-505 PB001708; Pfam-B_1708;  ali follow..  11  1..............MNEGIPEQL--------IRRLSDASLVPLALLAVVAAVIYVLIYRVAYSPSLLILVGTTVVAGIALVFWPRMGEDPLESAVTKWSILGTIVVAALVLSVAYSIPAGMAEERSLAQDATADAEAVTDF-PTVNEENPRIVPEAVANVQTKGSVSYRQHELGASDIARTEDGR.... 170
3 -4.290HGC00993 gi|163626727|dbj|BABG01009540.1|1.0 TMP01352;  ali follow..  14  1.............................................................................................MFSLLLSTFAMMGLTFVIGF---FVAGVIKLIASAADSLAFYSSHQEELARLKRIRKLHQKVATLITESALSDE...................... 71
4 -4.200PB019279 Q5LE73_BACFN/1-147 PB019279; Pfam-B_19279;  ali follow..  38  7............................................................................................KYLKLFLLAVAMINLTSC............................................................................... 24
5 -3.350PB002104 Q72PH8_LEPIC/1-220 PB002104; Pfam-B_2104;  ali follow..  10  4..................FKEKIQFSKIRSRSCPFMQQNKFRKAIVAILMPMILVVSFGNCFGKFAIVKKVYEVNDGFNIGSGLL------AKFIKTLVMYFPFSILYFVGFFFDLILFNLI................................................................... 101
6 -2.970PB067216 JCVI_PEP_1096676511767 /source_dna_id=JCVI_ORF_1096676511766 /offset=0 /translation_table=11 /length=256 /full_length=256  ali follow..  10  45........................................................................................VGTLSAVALIAATIVLVAFTSLREYIPGY---AVSLAEATDSLSQIISYNERYIERIRMVLKGDYAPSQIENDSLDLPFNLDTTTIALTPIREDSILR... 147
7 -2.970PB010473 Q8A4J5_BACTN/121-234 PB010473; Pfam-B_10473;  ali follow..  12  4.........................................LLPLEAMEYEINKGAGNPLE-------------FKGLKSQYLFIFAGGLVAVLLVVVILYIAGVNQWICIPFG--LVWLTFRLNARYGEHGLMKLLSGKRHPRYLIHRRRLFRLLTKRRK............................ 114
8 -2.920HGC00690 gi|162868815|dbj|BABB01001192.1|3.0 TMP00870;  ali follow..  16  38.....................RILRCSRIENIILIENVMICGVVAGNISLGFANMPKVPVSNICGNIIIAIYGLCVGIFV----GCIAVALAEILHTFPIIYKRMKLRAGLG----IIVISMAIGKALGA........................................................... 146
9 -2.710PB062605 Q9F6T7_BACTN/1-105 PB062605; Pfam-B_62605;  ali follow..  21  30......................................................................LKGYLDGLPPETCRRIVLGMLAAFLALYTFGRAAYDI.................................................................................. 68
10 -2.690HGC00762 gi|162641591|dbj|BAAX01018014.1|1.0 TMP00997;  ali follow..  17  2......................................................................................................................................................TPYKVSHQLKKLNNSSSLTKKNMTMEENTVHPARKLLLG 40
FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 8 5 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Rodrigues AP, Grant BJ, Godzik A, Friedberg I. The 2006 automated function prediction meeting. BMC Bioinformatics. 2007 May 22;8 Suppl 4:S1-4.