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Query: gi|15604726|ref|NP_219510.1| ribonuclease HIII (CT008) [Chlamydia trachomatis D/UW-3/CX], from C.trachomatis

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MPSSFVSQLSPSLFSILREQLEKKGFTISIPPHTVFQGRSPTVSCTVYQSGKIVVQGKGTQEFVEFFLEPEILQTFSSQNVQQDLRSRIGVDESGKGDFFGPLCTAGVYASSPQAIEALYKTSICDSKLIPDAKILSLAQNIRSLCACKVITLFPEKYNALYANFQNLNSLLAWTHATIIDNLAPHPAGAVFAISDQFASSERVLLQAVRKKCSDIELIQRHRAEQDVVVAAASILAREAFLSSIHALESQYQIRLLKGASGKVKQRAKEILHNKGQVVLEKVCKTHFKTFNEVLGSGNQLast
1 -3.540HGC00711 gi|162743779|dbj|BAAZ01020484.1|1.0 TMP00907;  ali follow..  18  28...........................................................................................DERGAGTVLVVGVIAVLLA--QAQAAAGRSRAAADLAALGGATALSSIVAPGDPCEAASRVARAN................................................................................................................................................ 99
2 -3.370PB004996 Q5NNS6_ZYMMO/1-150 PB004996; Pfam-B_4996;  ali follow..  8  57...........................................................................................NDGKQTPCKGHPVFLAQHATGTCCRGCIEK-RIEAGKSLSQEEQAYILDVIAHWLDLQKEVPPKKTKAATLNLPKKRKSKAEDVQGSLFPEI..................................................................................................................... 149
3 -3.110HGC00267 gi|163310129|dbj|BABD01000566.1|6.0 TMP00066;  ali follow..  16  17....................................................LVVEPMKAPYVKHIPNELEDLQQA-EMTYPFDDEVGILLNGNGKDAIAGTFLVVGL----------------DDFTSLTPEQIEKFKEKYQS............................................................................................................................................................ 116
4 -2.790PB006101 JCVI_PEP_1096697844517 /source_dna_id=JCVI_ORF_1096697844516 /offset=0 /translation_table=11 /length=371 /full_length=371  ali follow..  14  39...........................................................................................................................VMDSTKFKGKIGRELVDIYSSYISYDLRYIKPRKFNSILKHAKNIEILRRNFNSESLDKIQSDSSLFYFVRRNQYARGQVVLYLFSENDDDLYSKIKRNRNSILKFFDDELKIFRKVENNLMDKIFTDHNIKIKIPYGYDLAKSINE.............................. 212
5 -2.230PB006791 A6TXD6_9CLOT/1-181 PB006791; Pfam-B_6791;  ali follow..  16  117..........................................................................................LDENNNG-----MIITGIYGRSETVTYAKPVKDGKSNYSLSVEELQALQRAKEN............................................................................................................................................................ 165
6 -2.030PB012108 A3U600_9FLAO/1-189 PB012108; Pfam-B_12108;  ali follow..  6  1.......................................................................................................MLSLLLIEYNSITKRFLSGNIENSNAMAKKEKKQLKKRLLH--KYRMVILNEDTFEERVSLKLTRLNVFILVTLTSL........................................................................................................................ 81
7 -2.020HGC00024 gi|162813637|dbj|BABA01031072.1|2.0 TMP01508;  ali follow..  10  132........................................................................................CPMEESKKEQWSAPMP--------------LKTLSVDEANSISQTPQTEVYSQVEKDLKTAIDLLPVHYLRGI........................................................................................................................................... 210
8 -1.960PB012991 Q2RHT0_MOOTA/1-175 PB012991; Pfam-B_12991;  ali follow..  9  24................................YCNFLKGVFLLRIAVVDGQGGGIGKHITARLRQELPPEVEILALGTNAAATVAMIKAGANEGATGE--------AIIYNAPRVEAITGSLAIILADAMLGELTPAMAAAIAASPARKFLLINRSGVEVIGVTPEPLPHLIEALVNRVKFFYQEGGDK............................................................................................................... 174
9 -1.860PB003645 Q65HI2_BACLD/1-230 PB003645; Pfam-B_3645;  ali follow..  7  103..........ENQLKDILETIIGVE--------------DVSIVVNVDATSLKIFEKNRKTQETSTNETDKQGGKRTVSEMSSDEEIVIIKNGDKETPVVGVLVVA----------------GVDNVQ--IKKTIIEAVTRVLDVPSHRVAVAPKKMKED............................................................................................................................................ 230
10 -1.860PB044380 A7LRP7_BACOV/1-223 PB044380; Pfam-B_44380;  ali follow..  11  130...........................................................................................DAVSRVVTPDDLDNAGNVLFKLNDADKDEEKSLRAALTLHTIRETDLFEIFSSQVE------NKNVIDSLMGKYLD..................................................................................................................................... 199
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 5 5 3   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Veeramalai M, Ye Y, Godzik A. TOPS++FATCAT: fast flexible structural alignment using constraints derived from TOPS+ Strings Model. BMC Bioinformatics. 2008 Aug 31;9(1):35