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Query: gi|15604727|ref|NP_219511.1| HTH transcriptional regulator (CT009) [Chlamydia trachomatis D/UW-3/CX], from C.trachomatis

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSEHVHKELLHLGEVFRSQREERALSLKDVEAATSIRLSALEAIEAGHLGKLISPVYAQGFMKKYAAFLDMDGDRLLKEHPYVLKIFQEFSDQNMDMLLDLESMGGRNSPEKAIRSWLNLGWAGVFVVGAACIWWLGNLFNLFLast
1 -5.700PB001025 Q1QFV3_NITHX/1-288 PB001025; Pfam-B_1025;  ali follow..  11  15MKSDSPDLKTAMLGRIRADEPRKVWTPSDFVDRDAVDKTLQRLTKAEALRRIDRGLYDQ.................................................................................... 76
2 -3.840PB006791 A6TXD6_9CLOT/1-181 PB006791; Pfam-B_6791;  ali follow..  16  75..EKVHKRLDIINNRMSFCIQKVGMAFADMGSDLSYSYALLDENNNG---MIITGIYGRSETVTYAKPVGKSNYSLSVEELQALQRAKENTIDTLELQGFRSKKE...................................... 180
3 -3.790PB002794 gi|86143885|ref|ZP_01062253.1| hypothetical protein MED217_03525 [Flavobacterium sp. MED217]gi|85829592|gb|EAQ48055.1| hypothetical protein MED217_03525 [Leeuwenhoekiella blandensis MED217]  ali follow..  4  240IKVSTPDSNFKKPNLEDRFQPSDSLMTETLARVYVEQKNFSKAKQ---YRILPEKGFFADQIRAIEKLQE......................................................................... 312
4 -3.600PB003564 gi|46242789|gb|AAS83494.1| TraD [Bacteroides fragilis]  ali follow..  5  132..SELEYGEDKPEDEEPDKKQASGSSFEDIDMAVHTAGKVMTELDGTEFTRITERLTDEAMSERLAKAMA......................................................................... 213
5 -2.850PB062763 Q9F6U5_BACTN/1-245 PB062763; Pfam-B_62763;  ali follow..  5  132..EELEYGEDEPEDDEPGKGQASGSAFEDIDMAVRTAGKVMTELDGTEYSRITERLTDEPMSERLAKAMA......................................................................... 213
6 -2.770PB012771 _Gut.Meta.Jp.0094636_ gi|162817068|dbj|BABA01027641.1||1 (+ 249:636~0 complete)  ali follow..  8  1MKTTTTNELPAEIMENGIHYTLVGCMLGDNGKWASLYERYLQEKHPHEYVRL----IWADELAALLESVQRECEEREAVLVREMAEAEGVNEE.................................................. 98
7 -2.760PB008806 Q5L9W8_BACFN/1-127 PB008806; Pfam-B_8806;  ali follow..  5  5........................YILVKIPSFISYGNLQTATMIIGTPLSIAESYVHKNMGEILQQFLNINHINVSDWFKEQLNKLNQSVRMKQRQKIVRVQSSNDSILLDFSKKVKFNAALNLAFCI.............. 126
8 -2.740PB022815 A4DEQ0_LISMO/1-452 PB022815; Pfam-B_22815;  ali follow..  15  362...KQASDLLTEGKALSHKQHIEGTTIIFVRDKQDLEKSLY-TLERGKHNCDPTK--VQMAANKWAKLLKSKTKV.................................................................... 449
9 -2.730PB007733 A3U921_9FLAO/1-209 PB007733; Pfam-B_7733;  ali follow..  10  105IEEQFAAELKKLGQILKLIHRQTGVTTFQLIKNLRLKSEY----EDFLIEDILQRSFQRNILDNQPSVLNIDYFEASSKW............................................................... 209
10 -2.680PB015266 gi|154494998|ref|ZP_02034003.1| hypothetical protein PARMER_04044 [Parabacteroides merdae ATCC 43184]gi|154085548|gb|EDN84593.1| hypothetical protein PARMER_04044 [Parabacteroides merdae ATCC 43184]  ali follow..  11  21VQAQTSKAAXXXXXXXXXXXXXXXRLAKDAVMGEEAFNNAMQAITNRSFVLEANSVQPLN-VNSNTNFVSLNDGQAMVQIA.............................................................. 105
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 4 5 9   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Li W, Godzik A. In search for more accurate alignments in the twilight zone. Protein Sci. 2002 Jul;11(7):1702-13.