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Query: gi|15604729|ref|NP_219513.1| hypothetical protein (CT011) [Chlamydia trachomatis D/UW-3/CX], from C.trachomatis

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MINFVSWISRNWLQKLVSLGFAIIIWALANQSITVTRTFHNIPVRVIDLAPEQTVIGLQANGLLKKKVAMMITGNKSVVEKLRPSNLEIVISAKGRTESWIETIDPYNLVCLDTDIHLRKNIKSVTSEDIFIRLTQFVTEDVSVTITKPIGRAPKGYEYLDTWPKYLVQKVSGPKEYVSSLKDHGLELTFNLNKVSFEELDRNRLAQGNLDEVVYLVPEDWKKVYIPFDNSYMELNDPQADFLRLLFLKQEFIPLNINLPVLLFFPVENSQLVNPQNCYLEENAPLVLNHGIYQMDLPLYVKDVSHLFLDVVKNNIALTIIMEPPVKSQREHFIHWAVEFLDEKTLENTFVQAVMAQEQKTNKHMILDEAGIRHRFREYLRKLTLFDQNGEPLALTARTSGNKVIIQVTSSSLKKKSSLast
1 -6.260PB011023 A7V2G7_BACUN/1-167 PB011023; Pfam-B_11023;  ali follow..  7  1MNILNNKNKRTSIFKALALCLFAAVSFTFVSCDDDMDIQQSYPFTVETMPVPNKVT------GQTVEIRCELKKTGDF------ANTLYTIRYFQFEGEGTLKMDNGITFLPNDRYLLENEKFRLYAHNFIVVVEDNFGNSYELEFDFNNRNVKDDGVI-TVVPIGNFKPLT...................................................................................................................................................................................................................................................... 167
2 -4.620PB009233 Q7MX23_PORGI/1-175 PB009233; Pfam-B_9233;  ali follow..  8  1MGAAVRKQVRG-AISFFLVALGICLAVSCTYRKDERILYRQVPHGRWQKRDVLDYEILIPDYTRSYSLELLIRHDNR----YEYRDLALAYEVSVGERLIFADSVDLTLADKPNRFRLPISARFPYSGLYKIELKHNMRVP------TLSGITEVGIRLTEGRDSPPP.......................................................................................................................................................................................................................................................... 169
3 -4.450PB083081 gi|160890648|ref|ZP_02071651.1| hypothetical protein BACUNI_03093 [Bacteroides uniformis ATCC 8492]gi|156859647|gb|EDO53078.1| hypothetical protein BACUNI_03093 [Bacteroides uniformis ATCC 8492]  ali follow..  4  3..............KTIFYSLFSALFMLTSCSMFEIDNYEEPSETIWGEVVDEATGKRVLTDQGSEGIRVRLTELSWGDNVQHNPDFYCMMDNTKIFKGEYNVRIDGPFIPLVRE---NTDGTLLHDGSVNTEISGTTKVKFEV--------------------QP-FLNVEFVGNPQVSNGVIKAQVRVTRGVSDEV............................................................................................................................................................................................................................ 166
4 -3.910PB064361 Q64PJ4_BACFR/1-580 PB064361; Pfam-B_64361;  ali follow..  10  1MKIER--------LFIYCLLAGTSLLASCNSEDMTDNPVETYPLTFTAMQGEVVATPQTRVSDYDEVIGVKIGTDGAV------GSYTLDSDGKPTTSTSNIPAYWQS--------TASQTVYGWYPNTADISLTGQDNTGNKFPYVLKGVS-------SKQYSYKENVQLN------HQLVKFRVKLNGDVPNLSDAKVFFYGYPTCKNEYGTVIPQGDKTYLATRKVGDYYTA-----------------------APDTKTSNNFVKIEVYGLTYYYN---PDIELVKGTVYTYTVNKVDIPYEIIDNNGNSVSGFENISKDISISGTHIPGLTIT----GTCTVTMNSAAISANGKPGISVENDNVTLTLIVKGQDNSILSNDSAGILVRKNASVIIKGNTTTASDSKLTVKAS 375
5 -3.570PB004718 Q5LIA4_BACFN/1-189 PB004718; Pfam-B_4718;  ali follow..  8  3..............VKTSILLLLMIATALPSFGGNGNGNGTDSLQATRYVTRATMYGVGYTNVFDTYLSQEYKGIEFRITTLGDGNVSVQNFFQANLAYTHNRVDNNNTFAGLVNWNYGLHYQFRITDNFKLLAGGMGDFNGGFVYNLRNTNNPASARAY------INLDASGMAIWHTKIKNYPLALRYQVN................................................................................................................................................................................................................................. 183
6 -3.110PB004476 gi|139436894|ref|ZP_01771054.1| Hypothetical protein COLAER_00025 [Collinsella aerofaciens ATCC 25986]gi|133776541|gb|EBA40361.1| Hypothetical protein COLAER_00025 [Collinsella aerofaciens ATCC 25986]  ali follow..  8  29...............VLGLIVIVYI-VAFSQVAYPNTIIAGVDVSFSNASS---AATKVNSAWKHYKLTVTGDDFS----TYQPESNEPIVDGEAALSGKTKTTATSNEVDLDQDVDLSMLSDTFDQKKFEKDLGAAIDEFNEGRSGTFEANSSYDEQAGKFTVEKAR---SNEKLNREHVIK----------------------------YAELELASLAETVDLSKLGNDAYEPLNGTLTDDQIQAACNAANNFLGVNVTLKLNGEDAGKVDGSSVLQWISFADPANPTLDTSQISSWAAELANGF.............................................................................................................. 306
7 -2.970PB012823 Q5LCS8_BACFN/1-272 PB012823; Pfam-B_12823;  ali follow..  10  1MHKIKQMIKYIATLLLTVLFVAC-IWMRIIGDTIYYSDAQSAPVYFKILKDTLYTYG-----KDVTHYQIDKQSEYSFWFHSLADNIIKLHKSEDPNDTLAFSFKSVEIIPTYTEVTKKDSVVMFDGVRYRAYVYINPSQMKVVKTTYSEDGISMDNIYYDNVM---HICVYEGKKSLKDITKQMFVDVIPTDFLQQAILSDMNFIGIDRKGYHYQAL........................................................................................................................................................................................................ 243
8 -2.910PB144506 _Gut.Meta.Jp.0101058_ gi|162866171|dbj|BABB01003836.1||1 (- 121:946~0 complete)  ali follow..  11  1.............MKTKLVAVIALIFCAIITKEISVDNYSEIELG-NFWGNRSNKKFPVFKYTHGRSASLKITIDENLFPLLSIKAIRIQDGTRIKPTQYVIEGSSKTLKYLKTSGPMDFEAQNFSEDQLEIKISGSSDVKFPHNVKLVSG--SGDLVFADLDCKNLTSKVSGSGDITLKGKADEARYSV.................................................................................................................................................................................................................................... 208
9 -2.880HGC00711 gi|162743779|dbj|BAAZ01020484.1|1.0 TMP00907;  ali follow..  8  36...........LVVGVIAVLLAAALGVSGLIQAQAAAGRSRAAADLAALGGATALSSIVAPGDPCEAASRVARANGAEVTTCSVTGEDVVVEVS.................................................................................................................................................................................................................................................................................................................................... 118
10 -2.870PB029229 gi|150007903|ref|YP_001302646.1| hypothetical protein BDI_1263 [Parabacteroides distasonis ATCC 8503]gi|149936327|gb|ABR43024.1| conserved hypothetical protein [Parabacteroides distasonis ATCC 8503]  ali follow..  9  1MKTG---------IRVTVYALLAMILFSCEHKE--------------------------LCFHHPHMVTLRVDFDWKNAPQADPEGMCVYF-----------------------------------PEEGESPIRFDFAGKDGGSVEIKEGR----YRILCYNNDTESLLFRGMEGFDTHEGYTRDGNVFESIYGNGAHYAPPAKGSEDERVVI--------------CPDMMWGSCARNVEITELGLSYECISFADKDKVEWIESSEHVITLYPAELICTYTYEVRNVKNMEYMTACGSLSSMAP------------SMLFANEELDRECVTVPFETELHLESS......................................................................... 247
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 9 4 0   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Jaroszewski L, Godzik A. Tolerating some redundancy significantly speeds up clustering of large protein databases. Bioinformatics. 2002 Jan;18(1):77-82.