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Query: gi|15604730|ref|NP_219514.1| hypothetical protein (CT012) [Chlamydia trachomatis D/UW-3/CX], from C.trachomatis

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MFVGITYYTTPLLEIALIWVVLNYLLKFFWGTGAMDLVFGLLSFLCLFVLAEKLHLPVIRNLMLHVVNIAAIVVFIIFQPEIRLALSRIRLRRGKFVINMQDEFIDHLTACIYRMAERQIGALIVLENERLLNDLLNLSAVKINADFSEELLEAIFEPSSHLHDGAVLMRGETISYARVILPLAHDTTQLSRSMGTRHRAALGASQRTDALVIVVSEKTGAVSLARDGILTRGVKMDRFKAILRSILTRNERKTNPIISWMRKKLast
1 -5.230PB004996 Q5NNS6_ZYMMO/1-150 PB004996; Pfam-B_4996;  ali follow..  8  1........................................................................................................MANLDVLFERLSRSSFRRRFRLGVQE--QQYLANKGMETILEHGKDFIAQRLAPAEIPNDGKQTPCKGHPVFLAQHATGTCCRGCIEKWHRIEAGKSLSQEEQAYILDVIAH................................................ 110
2 -3.530HGC00683 gi|163310582|dbj|BABD01000118.1|4.0 TMP00861;  ali follow..  9  1..............................................................MKTLKITFVMLMTALF-------------LVLPSCSKDDVNVTLTPSEEVVNAFQQKYPDVKNVKWEILVGAY-TYSENGQHIVLDKVEAQAYITQGGKWVRSEFDVTKDYQDSSSLVVPRAVRETIAAKGKKVDDVKLFDWSDRNDYFYVEFDEPDSELLINFDGTL.................................. 162
3 -3.140HGC00164 gi|163636082|dbj|BABG01000191.1|4.0 TMP00833;  ali follow..  13  10..................................................................................................................LWGESVGSLYWEKESNAALFDYERKFIRSGLDISPKGLPGLFADSLPDTFGNQIIN--EWFASKGLSGEEITPLDRLCYVGKRGMGALEFEPSSPI-VLHIEELTELAKSVFTDRMAFQVQLRQEGRNILDILK................ 170
4 -2.900PB144506 _Gut.Meta.Jp.0101058_ gi|162866171|dbj|BABB01003836.1||1 (- 121:946~0 complete)  ali follow..  10  77...........................................................................................................................LKITIDENLFPLLSIKPTQYVIEGSSKTLKYL-----KTSGPMDFEAQNAFSEDQLEIKISGSSDVKFPHNVKLRLGEFSVSGSGDLVFADLDCKNLTSKVSGSGDITLKGKADEARYSV..................... 208
5 -2.740PB003564 gi|46242789|gb|AAS83494.1| TraD [Bacteroides fragilis]  ali follow..  11  1..........................................MTKAFLIVSVACNVWFLFLLFYDRIMDTKLIRFFRHIAGLWRSLDSTVAEQGKDKEIPHADTSDIIGKSRFKMASTRTTAAIPTQEAATSEK--NTETVSRPTQVPEDKLDETFTSIPPSEL--------------------EYGEDKPEDEEPDKKQASGSSDIDMAVHTIWKESPSDEEMRHAGKVMTELDGTELFTRITERLTDEAMSER......... 207
6 -2.460PB015266 gi|154494998|ref|ZP_02034003.1| hypothetical protein PARMER_04044 [Parabacteroides merdae ATCC 43184]gi|154085548|gb|EDN84593.1| hypothetical protein PARMER_04044 [Parabacteroides merdae ATCC 43184]  ali follow..  9  1..............................................................MKRIVSMMVIFTLLLG----------GMTHVQAQTSKAAXXXXXXXXXXXXXXXRLAKDAVMGEEAFNNAMQAITNRSFVLEANSVQPLNGRVYYVNSNTN---VSLNDGQAMV---QIASNSPYPGPNGLGGITATVNLVLYSGTNNAMVTVDPNFSGNNLTMNGTLLPYSDSNVFQ........................ 193
7 -2.440PB002104 Q72PH8_LEPIC/1-220 PB002104; Pfam-B_2104;  ali follow..  11  4.............................................................................FKEKIQSKIRSRSCPFMQQNKFRKAIVAILMPMILVVSFGNCFGKFAIVKKVYEVNDGFNIGSGLLAKFIKTLVMYFPFSILYFVGFFFDLILFNLIEFWSGNNPVGYNEYDENGKY-SDFGKRLDIQEGNSQNLIVFRAEPGKFFVEKDGKLEEIVVSSE.......................... 182
8 -2.170PB021443 Q5LG43_BACFN/1-226 PB021443; Pfam-B_21443;  ali follow..  11  1.....................................MKTMKFILACVLLLSPLLCQAQKNLFNKYNDMKGVSSVYISKAMME----------LNPNLFMKDLYIGKVAEHLNSVQ------VLSTHDNKVREEMAKD----IRSLVQSSKYELLMKQKSTVSGSEVYVNRK--------------------------------GSKVKELIMVMNGASSLKFVYMEGDM----TTDDIKKLMLYQ.................. 153
9 -2.070PB011130 gi|88806557|ref|ZP_01122074.1| hypothetical protein RB2501_00756 [Robiginitalea biformata HTCC2501]gi|88783389|gb|EAR14561.1| hypothetical protein RB2501_00756 [Robiginitalea biformata HTCC2501]  ali follow..  6  6............................................................................................................................................................................NINLANMLFHIDENAYQKLLRYLEAVKRSFAGTAGSDEIIADIEARIAELFYEKMENERQVITQKEVDAVIAIM.................. 79
10 -2.020PB071107 _Gut.Meta.Jp.0066071_ gi|162701604|dbj|BAAY01026246.1||2 (+ 344:749~0 complete)  ali follow..  19  3.................................................................................................................................................RFASHFL--FLPAYGYLKQYAVETEEGSVVR---IFPLTEEIENVEWLPGA.................................................................... 48
FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 9 6 7   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;