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Query: gi|15604731|ref|NP_219515.1| cytochrome d ubiquinol oxidase subunit I (CT013) [Chlamydia trachomatis D/UW-3/CX], from C.trachomatis

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSAEILARVQFALFIGFHYLFVPISLGLSMMIVLMEGLYLFTKKSIYKQLTWFWIRIFTLTFVVGVVTGLMQIFSFGANWSRFAEYTGNVFGMFLGSEGMFAFFLESGFLGVLLFGRYKVSKKMHFFSACMVALGAHMSAFWIVCANSWMQTPSGYEMVMRNGMLVPQMTSFWAAVLSPSALQRFTHVVLGAWLSGIFLVLSVSAHYLRKERHKDFANQGLKISMFCAFLVLALQLWSADVTARGVAKHQPAKLAAFEGVFKTQGHTPIYLLGIVDMKKERVIGIPIPSGLSLLVHRNAKTPVTGLDQFPKDEWPNVAFVFQTYHLMVMLWGVMVLLALIAFAVYKKKSWSCKKGILWILSFSVLCPELCNEIGWISTEVGRQPWVVYGLLKTKDATSPIVNAGQIWQSLILFSIIFICLLSVFVSLLLKKIGEGPDEQDLIEVDLLast
1 -3.670HGC00024 gi|162813637|dbj|BABA01031072.1|2.0 TMP01508;  ali follow..  9  6..........................................................................................................................................................................................................................NTLGMTKACLCALAVSLVTTG----SDLLDKEPPSAISDGSFWTGEGDAMLALTGCYRFQTGWSHDDFATPQGLLYLDFAGGNGTEKMASSNTVATNSNLRWYWGYTQIAKYNTFLENITDCPMEESKKEQWSAEVKCLRAYFFL------------LAFYYTDVPMPLKTLSVDEANSISQTPQTEVYSQVEKDLKTAIDLLPVHYLRGIWRLPGG........... 216
2 -2.740PB001708 Q3IRP6_NATPD/1-505 PB001708; Pfam-B_1708;  ali follow..  14  11.....................................................................................................................RRLSDASRLVPLALLAVVAAVIYVWRPLFHGLI----------------------YRVAYSPSLLILVGTTVVAGIALVFWPRMGED----PLESAVTKWSILGTIVVAALVLSVAYSIPAGMAEERSLAQDATADAEAVTDFPTVNEENPRIV............................................................................................................................................................................... 138
3 -2.390PB009534 gi|153852721|ref|ZP_01994158.1| hypothetical protein DORLON_00140 [Dorea longicatena DSM 13814]gi|149754363|gb|EDM64294.1| hypothetical protein DORLON_00140 [Dorea longicatena DSM 13814]  ali follow..  11  102................AKIVMVVMISFFGAAFSTMAFNNDVGVTKMFGQIYELLTTILEFMYCIGIIIGILTFFN................................................................................................................................................................................................................................................................................................................................................................................... 167
4 -2.050PB006154 _JGI.0331794_ 2004021056 [Human Gut Community Subject 7]  ali follow..  4  1......................................................................ASYISV----RDLTKVKSKVMFNLTKRQLICFGMAVLIGVPSFFLMKTVMKTNTAVMGMMVIMMPFFFLAMY................................................................................................................................................................................................................................................................................................................ 69
5 -1.790PB062605 Q9F6T7_BACTN/1-105 PB062605; Pfam-B_62605;  ali follow..  14  23..............................................................................................................................................................................................................................................................................................................................................................................................RKRLVERLKGYLDGLPPETCRRIVLGMLAAFAVLALYTFGRAAYDIGRNDGSRMETGHAGRVEL 86
6 -1.760HGC00928 gi|162868028|dbj|BABB01001979.1|3.0 TMP01255;  ali follow..  8  84........LPPLVLVVFILVVVTFALLMGGAGFIYNLSPFGADLINGAPLSMAIMGCIGTILFIGIPIFSLIYAICSQLFK--IRPLPTQARWILLALWLISFILCGVYI--MLYDWHNYWNGVH................................................................................................................................................................................................................................................................................................................................. 200
7 -1.760PB023890 Q7MUU3_PORGI/1-263 PB023890; Pfam-B_23890;  ali follow..  10  9...............................................................................WGRFGCYL--LFACPI----IFASIMKKEFIGRTAKSLSLALAIFSGCIFGSVLPAWSQEIVAGELERCFLAMPESV-LPIVTMEERNDLCRRAGHLSGFTHTASLESSLGGTVTF........................................................................................................................................................................................................................................................... 118
8 -1.730PB034180 _Gut.Meta.Jp.0112129_ gi|163310377|dbj|BABD01000320.1||2 (+ 509:1679~0 complete)  ali follow..  7  1....................MNKLQIYTNDWLKIHPYTAVQPSDSYFVNLSNKLLGMYIAAYLEDQISELGL-------WQSFTAEHKRLYGKYLPFYPTNSNYVEINEEDIRFIIWNTWQKAASLHEKTYINIKEQAGIFYGILEEAYENAPENESLNH.............................................................................................................................................................................................................................................................................................. 156
9 -1.530PB032242 Q8FLW6_COREF/1-257 PB032242; Pfam-B_32242;  ali follow..  11  35....................YGSLTMTAGLILSLLGPAYL---QITAGMVWVAFLAVAAIFGVLWFVEPLTYFPILGSAAMYQAFMIGNISNKLV----------PAAIVAQSSIGAKAGSKRGDLAAVMAIGGAATMHLLSLLIFVGFLGT-------------------LVSLVPVEVIEVARLYIMPS-------LMGAVLVQAIVSMRNVRATVVALGLAVVIQLFATAVVVISSIIINWVVRDRRGQVTIQSEAAPEPN...................................................................................................................................................................................... 257
10 -1.500PB002104 Q72PH8_LEPIC/1-220 PB002104; Pfam-B_2104;  ali follow..  10  8...............................IQFSKIRSRSCPFMQQNKFRKAIVAILMPMILVVSFGNCFGKFAIVKKVYEVNDGFGSGLLAKFIKTLVMYFPFSILY-----------------------FVGFFFDLILFNLIEFWSNNPVGYN................................................................................................................................................................................................................................................................................................. 113
FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 9 1 1   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. VISSA: a program to visualize structural features from structure sequence alignment. Bioinformatics. 2006 Apr 1;22(7):887-8. Epub 2006 Jan 24.